RetrogeneDB ID: | retro_cfam_1926 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 8:689075..689563(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000029235 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA3 | ||
Ensembl ID: | ENSCAFG00000032092 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 3 [Source:HGNC Symbol;Acc:19199] |
Percent Identity: | 91.52 % |
Parental protein coverage: | 72.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGSPKQLHPSWAPGSSQMFPEEHSQEGSAAVQTMSEVLVKNLSKLTLDPSIKLPSPLPDYPPQQQEREKK |
M.SPKQLHP.WAPGSSQMF.EEHSQEGSA.VQTMSEVLVKNLSKLTL.PSIKLPSPLP.YPPQQQEREKK | |
Retrocopy | MYSPKQLHPAWAPGSSQMFTEEHSQEGSA-VQTMSEVLVKNLSKLTLNPSIKLPSPLPEYPPQQQEREKK |
Parental | PQGLVDRILSNNRKRSGVRTLLTARKERMERMIRLIQYQRYLNKRSMLQKDLPEQEIEGESRVERFRCTC |
.QGLVD.ILSNNRKRSGVRTLLTARKERMERMIRLIQYQRYL...SMLQKDLPEQEIEGESRVERFRCTC | |
Retrocopy | TQGLVDSILSNNRKRSGVRTLLTARKERMERMIRLIQYQRYLKEQSMLQKDLPEQEIEGESRVERFRCTC |
Parental | HYCLYHKDVSEDT-SMENNYDTEPI |
HYCLYHKD.SEDT.SMENNYDTEP. | |
Retrocopy | HYCLYHKDISEDT<SMENNYDTEPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .17 RPM |
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .66 RPM | 99 .32 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000046609 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032092 | 1 retrocopy |
retro_cfam_1926 ,
|
Callithrix jacchus | ENSCJAG00000005409 | 10 retrocopies | |
Homo sapiens | ENSG00000187569 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000013040 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000017530 | 3 retrocopies | |
Mus musculus | ENSMUSG00000046323 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026887 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000024813 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000004230 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000004617 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000022950 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000000751 | 3 retrocopies |