RetrogeneDB ID: | retro_ogar_1775 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873565.1:2165775..2166138(+) | ||
Located in intron of: | ENSOGAG00000008388 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA3 | ||
Ensembl ID: | ENSOGAG00000024813 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 3 [Source:HGNC Symbol;Acc:19199] |
Percent Identity: | 52.42 % |
Parental protein coverage: | 75.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LIKNLSKLSLNPSTSFPPSLPEGFTQQQD-RESSFQDMRDGWPLRKRRGVRTLLSVQRERMARLRYILIN |
L..N..K.SL..ST.FP..LPEGFTQ.QD.RES.FQ..RDGW.L..RR.........R...ARLR..L.N | |
Retrocopy | LLQNVNKSSLIASTNFPSPLPEGFTQKQDKRESIFQSSRDGWLLISRRSEDDVI*AERP--ARLRHLLLN |
Parental | KFSPLARRLKDAELKGVQNDY-SKPFKCRCSYCVSNNWDPSENARIGNDNTESV |
..S....R..D..L.GVQN.Y.S.PFKC.CS......WDPSENARIGN...E.. | |
Retrocopy | RLSQ-PERMTDTGLNGVQNKYTSDPFKCCCSSSICHRWDPSENARIGNYGNEPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000046609 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032092 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005409 | 10 retrocopies | |
Homo sapiens | ENSG00000187569 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000013040 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000017530 | 3 retrocopies | |
Mus musculus | ENSMUSG00000046323 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026887 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000024813 | 7 retrocopies |
retro_ogar_1514, retro_ogar_1618, retro_ogar_1775 , retro_ogar_1780, retro_ogar_1964, retro_ogar_2538, retro_ogar_3406,
|
Pongo abelii | ENSPPYG00000004230 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000004617 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000022950 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000000751 | 3 retrocopies |