RetrogeneDB ID:

retro_ggor_3052

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:X:101168601..101169080(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DPPA3
Ensembl ID:ENSGGOG00000013040
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_3052
ATGGACCCATCAAAGAAGTTTAATCCAACCTACATCCCAGAGTCTCCACAAATGCTCACCGAAGAAAATTCCCGGGACGA
TTCAGGGGCCTCTCAAATCTGCTCCGAGACGTTGATAAAGAACCTTATAACTTGACTATCAACGCTAGTAGCGAATCTGT
TTCCCCTCTATCGGAAGCTTTACTCCGTCGAGAGTCTGTAGGAGCAGCAGTCCTCAGGGAAATCGAAGATGAGTGGCTTT
ACAGCAGGAGAGGAGTAAGAACATTGATGTCTGTGCAGAGAGAAAAGATGGCAAGATTGAGATACATGTTACTCGGCAGA
GTTCGTATGCATGAAAGAAGACCAACAAACAAGGAGCCTAAGGGAGTTAAGAAGGAATCAAGACCATTCAAATGTCCCTG
CAGTTTCTGCGTGTCTAACTGATGGGATCCTTCTGAGAATGCTAGAATAGAGAATCAAGACACCAAGCCACTTCAGCCA

ORF - retro_ggor_3052 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.17 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMDPSQ-FNPTYIPGSPQMLTEENSRDDSGASQISSETLIKNLS-NLTINASSESVSPLSEALLRRESVGA
MDPS..FNPTYIP.SPQMLTEENSRDDSGASQI.SETLIKNL..NLTINASSESVSPLSEALLRRESVGA
RetrocopyMDPSKKFNPTYIPESPQMLTEENSRDDSGASQICSETLIKNLI<NLTINASSESVSPLSEALLRRESVGA
ParentalAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPTNKEPKGVKKESRPFKCPCSFCVS
AVLREIEDEWLYSRRGVRTL.SVQREKMARLRYMLLG.VR.HERRPTNKEPKGVKKESRPFKCPCSFCVS
RetrocopyAVLREIEDEWLYSRRGVRTLMSVQREKMARLRYMLLGRVRMHERRPTNKEPKGVKKESRPFKCPCSFCVS
ParentalNGWDPSENARIGNQDTKPLQP
N.WDPSENARI.NQDTKPLQP
RetrocopyN*WDPSENARIENQDTKPLQP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .08 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .52 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_3052 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_3052 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 13 parental genes, and 58 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000466091 retrocopy
Canis familiaris ENSCAFG000000320921 retrocopy
Callithrix jacchus ENSCJAG0000000540910 retrocopies
Homo sapiens ENSG000001875696 retrocopies
Gorilla gorilla ENSGGOG00000013040 4 retrocopies
Mustela putorius furoENSMPUG000000175303 retrocopies
Mus musculus ENSMUSG000000463234 retrocopies
Nomascus leucogenys ENSNLEG000000268872 retrocopies
Otolemur garnettii ENSOGAG000000248137 retrocopies
Pongo abelii ENSPPYG000000042306 retrocopies
Pan troglodytes ENSPTRG000000046177 retrocopies
Rattus norvegicus ENSRNOG000000229504 retrocopies
Tursiops truncatus ENSTTRG000000007513 retrocopies



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