RetrogeneDB ID: | retro_cfam_264 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:65965756..65966398(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB2 | ||
Ensembl ID: | ENSCAFG00000005520 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris small nuclear ribonucleoprotein polypeptide B (SNRPB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001251968] |
Percent Identity: | 92.06 % |
Parental protein coverage: | 95.11 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQG |
DIRPNH.IY.NNM.DKIKKEELK.SLYALFSQFG.VV.IVAL.TMKMRGQAFVIFKELGSSTN.LRQLQG | |
Retrocopy | DIRPNHIIYMNNMKDKIKKEELK*SLYALFSQFGPVVGIVALQTMKMRGQAFVIFKELGSSTNGLRQLQG |
Parental | FPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTASKKPGQGTPNAANTQGNSTPN |
FPFYGKPMR.Q.AKTDSDIISKMRGT.ADKE.KK.KKKAKTVEQTATTA.KKPGQGTPNAAN.QGNSTPN | |
Retrocopy | FPFYGKPMRTQ*AKTDSDIISKMRGTLADKE*KKGKKKAKTVEQTATTANKKPGQGTPNAANAQGNSTPN |
Parental | PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFK |
PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQF.GFKEVRLVPGRHDIAFVEFENDGQAG.ARDALQGFK | |
Retrocopy | PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFLGFKEVRLVPGRHDIAFVEFENDGQAGGARDALQGFK |
Parental | ITPS |
ITPS | |
Retrocopy | ITPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 22 .72 RPM |
SRP017611_brain | 0 .00 RPM | 11 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .53 RPM |
SRP017611_liver | 0 .00 RPM | 6 .67 RPM |