RetrogeneDB ID: | retro_sara_548 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_232684:13573..13910(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB2 | ||
Ensembl ID: | ENSSARG00000002681 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide B [Source:HGNC Symbol;Acc:11155] |
Percent Identity: | 86.09 % |
Parental protein coverage: | 50.22 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VEQTAAIANKKPGLGT-PNSANTQGN-SAQNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV |
VEQTAAIAN.KPGLGT.P.SANTQGN..AQNPQVPDYP.NYILFLNNLP.ETNEMMLSMLFNQ.P.FKEV | |
Retrocopy | VEQTAAIANMKPGLGT<PSSANTQGN<LAQNPQVPDYPSNYILFLNNLPGETNEMMLSMLFNQVP*FKEV |
Parental | RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK |
.LVPGR.DI.FVEFENDGQAGAA.DA.QGFKITPSH.MKIT.AKK | |
Retrocopy | HLVPGRDDITFVEFENDGQAGAAKDA*QGFKITPSHNMKITWAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |