RetrogeneDB ID: | retro_tsyr_1247 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_362764:271..934(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB2 | ||
Ensembl ID: | ENSTSYG00000008857 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide B [Source:HGNC Symbol;Acc:11155] |
Percent Identity: | 88.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRG-QAFVIFKELGSSTNALRQL |
MDIRPNH.IYINNMNDKIKKEELK.SLYALF.QFGHVVDIVALKTMK.RG.QAFVIFKELGSSTNALRQL | |
Retrocopy | MDIRPNHNIYINNMNDKIKKEELKSSLYALFTQFGHVVDIVALKTMKIRG<QAFVIFKELGSSTNALRQL |
Parental | QGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKPGQGMPNSANTQGNAT |
QGFPFYGKPMRIQYAKTDSDIISKM.GTF.D.....EKKKAKTVEQ.ATTANK.PGQGMPNSANTQGN.. | |
Retrocopy | QGFPFYGKPMRIQYAKTDSDIISKMLGTFGDT----EKKKAKTVEQIATTANKNPGQGMPNSANTQGNTK |
Parental | PNPQV-PDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQ |
PNPQV.PDYPPNYILFLNNL.E.TNEMMLSML.NQFPGFKEV..VPGRHDIAF.EFEND..AG.ARDALQ | |
Retrocopy | PNPQV>PDYPPNYILFLNNLLEGTNEMMLSMLLNQFPGFKEVH*VPGRHDIAFAEFENDEKAGTARDALQ |
Parental | GFKITPSHAMKITYAKK |
GFKIT.SHAMKITYAKK | |
Retrocopy | GFKITQSHAMKITYAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |