RetrogeneDB ID: | retro_etel_1283 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_240761:2..451(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB2 | ||
Ensembl ID: | ENSETEG00000001085 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide B [Source:HGNC Symbol;Acc:11155] |
Percent Identity: | 60. % |
Parental protein coverage: | 68.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 10 |
Parental | QFGHVVDIVALK-TMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAK-TDSDIISKMRGTFAD |
QF.HVV.IV..K...KM..QA.V.FKELGS.TN.LRQLQ..P.YGKPM.I.YAK.TDSD..S.M.GTF.D | |
Retrocopy | QFDHVVYIVTFK<AVKMSRQAIVLFKELGSPTNTLRQLQECPSYGKPMQIKYAK<TDSDRLSQMCGTFSD |
Parental | KEKKKEKKKAK-TVEQTATAT-NKKLGQ-GLPNSATAQGNSTASP-QVPDY-PPNYILFL-NNLP-EETN |
....KE..KAK.TVE.TATAT.N.KL...G..NSA..QGN.T.S..QVPD..PPN.I.FL.N.LP.E.TN | |
Retrocopy | ----KEIEKAK<TVE*TATAT<NPKLDM<GIANSANTQGNATPSV<QVPDF<PPNSISFL>NDLP>EDTN |
Parental | EMML-SMLFNQNPGIEEVRL-PGRH |
EMM..SM.F.......EVRL..G.H | |
Retrocopy | EMMV>SMPFKSFSWFKEVRLVTGKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |