RetrogeneDB ID: | retro_ecab_118 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:17358654..17359014(+) | ||
Located in intron of: | ENSECAG00000024113 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB2 | ||
Ensembl ID: | ENSECAG00000018407 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide B [Source:HGNC Symbol;Acc:11155] |
Percent Identity: | 62.9 % |
Parental protein coverage: | 53.78 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KEKKKAKTVEQTATTANKKPGQGTPN-SVNTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQ |
..K.K...VE.TATT.NK..GQ..PN.S.NTQ..STPNPQVP.YP.NY..FLNNLP.E.NEMMLSM...Q | |
Retrocopy | QRKEKSQSVE*TATTTNKTAGQEIPN<SANTQRHSTPNPQVPHYPLNYVVFLNNLPKEMNEMMLSM*CSQ |
Parental | F-PGFKEVRLVPGRHDIAFVEFENDGQAGAAR-DALQGFKITPSHAMKITYAKK |
F.PGFKEV..VPGR...A.VEFEND.QAG.AR...L.GF..T..H.MKI...KK | |
Retrocopy | F<PGFKEVHSVPGRDNVAVVEFENDTQAGGAR<GTLRGFWVTLPHTMKIA*VKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 7 .44 RPM |
SRP021940_cerebellum | 0 .05 RPM | 5 .45 RPM |
SRP021940_embryo | 0 .03 RPM | 29 .95 RPM |
SRP021940_placental_villous | 0 .05 RPM | 13 .95 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 9 .47 RPM |
SRP021940_testis | 0 .00 RPM | 17 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_732 |
Pan troglodytes | retro_ptro_520 |
Gorilla gorilla | retro_ggor_617 |
Pongo abelii | retro_pabe_630 |