RetrogeneDB ID: | retro_cfam_447 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 11:18699901..18700218(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019677 | ||
Aliases: | None | ||
Description: | Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:F1PEZ2] |
Percent Identity: | 73.83 % |
Parental protein coverage: | 54.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AEHYHDLQRKPFYPSLISYMTSGPVVAMVWEGPNVV-CSSRTMIGHTDSAEAAPGTIRGDFSVHISRNII |
AEHYHDLQ.K.FYP.L.SYM.SGPVVAM.WE..NV..CSS..M.GHTDSAEAA.GTIRG.F.VHISRNII | |
Retrocopy | AEHYHDLQTKSFYPALLSYMNSGPVVAMIWEDSNVG<CSSKAMMGHTDSAEAASGTIRGYFQVHISRNII |
Parental | HASDSVEGARREIQLWFQSSELVDWADENHHSSIYAA |
...D..EGA..EIQLWFQSSELVD.A.E.H.SSIY.A | |
Retrocopy | YSNDYMEGAQSEIQLWFQSSELVDGAEESHQSSIYPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 14 .53 RPM |
SRP017611_brain | 0 .00 RPM | 8 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 60 .69 RPM |
SRP017611_liver | 0 .00 RPM | 21 .32 RPM |