RetrogeneDB ID: | retro_cfam_459 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 11:32462414..32463199(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA7 | ||
Ensembl ID: | ENSCAFG00000015125 | ||
Aliases: | None | ||
Description: | karyopherin alpha 7 (importin alpha 8) [Source:HGNC Symbol;Acc:21839] |
Percent Identity: | 90.53 % |
Parental protein coverage: | 50.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | WALSYLTDGCNERIGQVVNTGVLPRLVQLMSSSELNVLTPSLRTIGNIVTGTDYQTQMAIDAGMLNVLPQ |
WALSYLT..CNERIG.VVN.GVLPRLVQLMSSSELNVLTPSLRTIGNIVTGTDYQTQMA.DAGMLNVLPQ | |
Retrocopy | WALSYLTNSCNERIG*VVNSGVLPRLVQLMSSSELNVLTPSLRTIGNIVTGTDYQTQMAVDAGMLNVLPQ |
Parental | LLMHPKSSIQKEAAWALSNVAAGPCQHIQRLIACGMLPPLVALLKNGEFKVQKEAVWIVANFTTGGTIDQ |
LL.HPKSSIQKEAAWALS.VAAG.CQHIQRLIAC.MLPPLVALLKNGEFKVQKEAVW.VANFTTGGTIDQ | |
Retrocopy | LLTHPKSSIQKEAAWALSIVAAGSCQHIQRLIACSMLPPLVALLKNGEFKVQKEAVWTVANFTTGGTIDQ |
Parental | LIHLVHSGVLEPLVNLLTIQDTKIVIIILDIISFILQAAEKLSEKENLCLLIEEIGGIDKIEALQLHENP |
LIHLV.SGVLEPLVNLLTIQDTKIVI.I.D..SFILQA.EK.SEKENLCLLIEEIGGIDKIEALQ.HENP | |
Retrocopy | LIHLVYSGVLEPLVNLLTIQDTKIVITIPDFLSFILQAVEKFSEKENLCLLIEEIGGIDKIEALQIHENP |
Parental | QVALTALNIIENHFCEGEES-GAILPALDQDNEFLNRLTKKHQGPTTSKQRTKP |
QVALTALNII..HFCEGEES..AILPALDQDNEFLNRLTKK.QG.TTSK.RTKP | |
Retrocopy | QVALTALNIIKSHFCEGEES<CAILPALDQDNEFLNRLTKKYQGTTTSK-RTKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .42 RPM |
SRP017611_brain | 0 .00 RPM | 0 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011598 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015125 | 2 retrocopies |
retro_cfam_459 , retro_cfam_861,
|
Choloepus hoffmanni | ENSCHOG00000004243 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015943 | 1 retrocopy | |
Equus caballus | ENSECAG00000000554 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000096 | 1 retrocopy | |
Homo sapiens | ENSG00000185467 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038770 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010827 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031106 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000015434 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017369 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019446 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000009007 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000002998 | 2 retrocopies |