RetrogeneDB ID: | retro_ttru_1426 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_113008:18183..19360(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA7 | ||
Ensembl ID: | ENSTTRG00000002998 | ||
Aliases: | None | ||
Description: | karyopherin alpha 7 (importin alpha 8) [Source:HGNC Symbol;Acc:21839] |
Percent Identity: | 52.67 % |
Parental protein coverage: | 77.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PDASEQQTKRTVSLTLQEIINGVNASDPELCFQATQAARKMLSREKNPPLKLIVDAGLIPRLVEFLKSSL |
P.........TV......I..G.N....E...QATQAARK.LSREK.PP...I..AGLIP..V.FL.... | |
Retrocopy | PLQENRNNQGTVNRSVDDIVKGINSNNLESQLQATQAARKLLSREKQPPIVSIIRAGLIPKFVSFLGRAD |
Parental | HPRLQLEAAWALTNIASGTSELTRAVVDGGAIQPLVELLSSPHMTVCEQAVWALGNIAGDGPKFRDDVIL |
....Q.E.AWALTNIAS.TSE.T.AVVDGGAI.....LL.SPH....EQAVW.LGNIAGDG..F.D.VI. | |
Retrocopy | CSPIQFESAWALTNIASATSEQTKAVVDGGAIPVFISLLTSPHAHISEQAVWTLGNIAGDGSVFQDLVIK |
Parental | SDAIPHLLTLVS----SSIPVTFLRNITWTLSNLCRNKNP-YPSDHAVKQMLPTLFHLLWHPDEEVLSDT |
..A...LL.L......S......L...TWTLSNLCRNKN...P....V.Q.LPTL..LL.H.D.E.L... | |
Retrocopy | HGAVDPLLALLAVPDLSFLACGYLHSLTWTLSNLCRNKNT>QPALDVVEQILPTLVRLLHHHDPEILAGA |
Parental | CWALSYLTDGCDTRIGQVVDTGVLPRLVELMSSSELNVLTS-LRTVGNIVTGTDHQTQLALDAGILAVLP |
CWA.SYLTDG....I..VV.TGV.P.LV.L....EL...T..LR..GNIVTGTD.QTQ...D.G.LA..P | |
Retrocopy | CWAISYLTDGPNEWIEMVVKTGVVPQLVKLSGATELPIVTLVLRAIGNIVTGTDEQTQVVIDVGVLAIFP |
Parental | QLLTHPRSSIQKEAAWALSNVAAGPRQHIQQLIACGVLPPLVAVLESGDFKVQKEAVWTVANFTTGGTVD |
.LLT.....IQKEA.W..SN..AG....I.Q....G..P.LV.VL...DF..QKEAVW.V.N.T.G.TV. | |
Retrocopy | SLLTNSKTNIQKEATWTMSNITAGHQDQIHQIVNHGLVPFLVGVLSKADFRTQKEAVWAVTNYTRGRTVE |
Parental | QLIQLVQAGVLEPLINLLTIPDTKIVLIILDILFFILQAAEKI |
Q...LV..G..EPLINLLT..DTKI.L.ILD....I.Q.AEK. | |
Retrocopy | QIVYLVHCGITEPLINLLTAKDTKIILVILDAI*NISQTAEKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015125 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000004243 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015943 | 1 retrocopy | |
Equus caballus | ENSECAG00000000554 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000096 | 1 retrocopy | |
Homo sapiens | ENSG00000185467 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038770 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010827 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031106 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000015434 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017369 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019446 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000009007 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000002998 | 2 retrocopies |
retro_ttru_1426 , retro_ttru_430,
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