RetrogeneDB ID: | retro_tbel_3862 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_24494:462..1205(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA7 | ||
Ensembl ID: | ENSTBEG00000009007 | ||
Aliases: | None | ||
Description: | karyopherin alpha 7 (importin alpha 8) [Source:HGNC Symbol;Acc:21839] |
Percent Identity: | 56.22 % |
Parental protein coverage: | 50.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IIEAGLIPRLVEFLKSSLHPCLQFEAAWALTNIASGTSEQTRAVVEGGAIQPLIKLLSSPNVTVCEQAVW |
II.AGLIP..V.FL........QFE.AWALTNIASGTSEQT..VV.G..I...I.LL.SP.....EQAVW | |
Retrocopy | IIWAGLIPKFVSFLGRNDCSPIQFESAWALTNIASGTSEQTKDVVDGRGIPAFISLLASPHAHISEQAVW |
Parental | ALGNIAGDGP-EFRDIIISSNAIPHLLALVS----STLPITFLRNITWTLSNLCRNKNPYPCDKAVKQML |
ALGN.AGDG...FRD..I...A...LL.L......S.L....L.N.TWTLSNLC.NKN..P...AV.Q.L | |
Retrocopy | ALGNTAGDGS<SFRDLVIKYGAVDPLLTLLAVPDMSSLACGHLHNLTWTLSNLCCNKNLAPPLDAVEQIL |
Parental | PVLSYLLQHQDSEIVSDTCWALSYLTDGSNERIGHVVDMGVLPRLVELLASSELNVLTPSLRTVGNIVTG |
P.L.YLL.H.D.E...DTCWA.SYLTDGSNE.I...V..GV...LV.LL...E....TP.LR..GNIVTG | |
Retrocopy | PTLIYLLHHDDPEVLADTCWAISYLTDGSNEWIDMAVKTGVVSQLVKLLGATEEPIVTPALRAIGNIVTG |
Parental | TDHQTQMAIDAGMLSLLPQLLGHPKPSIQKEAAWALSNV |
TD.QTQ..ID.G.L...P.LL...K..IQKEA.W..SN. | |
Retrocopy | TDEQTQVVIDGGALAVFPSLLTNSKTNIQKEATWTMSNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015125 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000004243 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015943 | 1 retrocopy | |
Equus caballus | ENSECAG00000000554 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000096 | 1 retrocopy | |
Homo sapiens | ENSG00000185467 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038770 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010827 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031106 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000015434 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017369 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019446 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000006274 | 14 retrocopies | |
Tupaia belangeri | ENSTBEG00000009007 | 3 retrocopies |
retro_tbel_1475, retro_tbel_3862 , retro_tbel_3962,
|
Tursiops truncatus | ENSTTRG00000002998 | 2 retrocopies |