Parental gene:

KPNA7, ENSECAG00000000554

Aliases:None
Description:karyopherin alpha 7 (importin alpha 8) [Source:HGNC Symbol;Acc:21839]
Organism:Horse (Equus caballus)
Coordinates:13:359234..383721(+)


>ENSECAG00000000554
ATGCTGACAGGAGCTCCAGAAGGGAGGCTGAGAAAATTTAAGTACCGCGGCAAAGACACAGCTGTGAGGCGGCAACAGCG
CATAGCAGTCAGCCTGGAGCTCCGGAAGGCCAAGAAAGACGAGCAAGCCTTAAAGAGAAGAAATATCACCCCTCTCTCCC
CTGACCCAGCTTCTGAACAACAGACCAAAGCGATCAACCTCACCCTGCAAGAAATAATCAATGGTGTGAATGCCTCAGAT
CCAGACTTATGTTTCCAGGCCACCCAGGCAGCCAGGAAAATGCTGTCCCGGGAAAGGAACCCTCCTCTAAAACTGATTAT
TGAAGCAGGGCTCATTCCCAGGCTGGTGGAGTTCCTGAAGTCATCGCTTCACCCCTGCTTGCAGTTCGAGGCAGCCTGGG
CTCTGACCAACATCGCTTCGGGGACCTCGGAGCAGACTCGAGCCGTCGTGGAAGGGGGAGCCATCCAGCCTCTGGTGGAG
CTTCTGTCTTCCCCTCATATGACTGTGTGTGAACAGGCAGTGTGGGCCCTCGGTAATATAGCAGGTGATGGCCCAGAATT
CAGAGACATTGTCATCTCAAGCAATGTCATCCCGCAGCTGCGGGCCCTGATTTCATCAACCACACCAATCACGTTTCTGC
GGAACATCACATGGACCCTGTCCAACCTGTGCCGAAACAAGAACCCGTACCCTTGCGAAAGAGCAGTGAAGCAAATGCTG
CCCGTCCTCTCCCGCCTCCTTCAGCACCAGGACAGCGAGGTTCTCTCGGACGCCTGCTGGGCCCTGTCCTACCTCACCGA
CGGCTGCAATGATCGCATCGGCCAAGTGGTTGACATCGGCGTCCTGCCCAGGCTGGTGGAGCTCATGACCAGCTCGGAAC
TCAACGTCTTGACGCCCTCTCTCCGCACTGTGGGGAACGTCGTCACGGGAACGGATCACCAGACCCAGGTGGCCATTGAT
GCGGGCATGCTGAGCGTTCTTCCCCAGCTCCTGATGCACCCCAAGGCCTCCATCCAGAAGGAGGCAGCCTGGGCCCTGAG
CAACGTGGCCGCAGGGCCCTGCCAGCACATCCAGCAGCTCATTGCTTGCGGCATGCTGCCTCCGCTGGTGGCTCTGCTAA
AAAACGGAGAATTTAAAGTCCAGAAAGAGGCGGTCTGGACAGTGGCTAACTTCACAACTGGGGGCACCGTGGACCAGTTG
ATCCAGCTTGTCCGCTCTGGAGTCTTGGAGCCACTGGTGAATCTGCTCACCATCCAAGACCCCAAAATTGTTCTCATCAT
CCTTGACATCATCTCTTTTATCCTCCAGGCAGCAGACGTGCTTTCCGAGAAGGAAAACCTGTGTCTTCTGATAGAAGAGC
TTGGCGGGCTTGATAGAATCGAGGCTTTGCAGCTTCATGAGAACCGTCAGGTTGCCCGGACTGCTTTGAACATTATCGAG
AACCACTTTTGTGAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 0 .05 RPM
SRP021940_embryo 0 .05 RPM
SRP021940_cerebellum 0 .00 RPM
SRP021940_testis 1 .21 RPM
SRP021940_placental_villous 0 .05 RPM
SRP021940_articular_cartilage 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015125 ortholog_one2one 2 retrogenes
retro_cfam_459, retro_cfam_861,
Choloepus hoffmanni ENSCHOG00000004243 ortholog_one2one 1 retrogene
retro_chof_805,
Callithrix jacchus ENSCJAG00000015943 ortholog_one2one 1 retrogene
retro_cjac_2964,
Equus caballus ENSECAG00000020573 within_species_paralog 2 retrogenes
retro_ecab_1017, retro_ecab_1123,
Echinops telfairi ENSETEG00000000096 ortholog_one2one 1 retrogene
retro_etel_1548,
Homo sapiens ENSG00000185467 ortholog_one2one 1 retrogene
retro_hsap_3337,
Mus musculus ENSMUSG00000038770 ortholog_one2one 2 retrogenes
retro_mmus_2844, retro_mmus_3301,
Nomascus leucogenys ENSNLEG00000010827 ortholog_one2one 1 retrogene
retro_nleu_1680,
Otolemur garnettii ENSOGAG00000031106 ortholog_one2many 3 retrogenes
retro_ogar_1289, retro_ogar_3237, retro_ogar_353,
Ochotona princeps ENSOPRG00000015434 ortholog_one2one 2 retrogenes
retro_opri_1101, retro_opri_118,
Pongo abelii ENSPPYG00000017369 ortholog_one2one 1 retrogene
retro_pabe_2750,
Pan troglodytes ENSPTRG00000019446 ortholog_one2one 2 retrogenes
retro_ptro_102, retro_ptro_2142,
Tupaia belangeri ENSTBEG00000009007 ortholog_one2one 3 retrogenes
retro_tbel_1475, retro_tbel_3862, retro_tbel_3962,
Tursiops truncatus ENSTTRG00000002998 ortholog_one2one 2 retrogenes
retro_ttru_1426, retro_ttru_430,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_981 62.76 68.45
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Download FASTA sequences of all ENSECAG00000000554 retrocopies