RetrogeneDB ID: | retro_etel_1548 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_277835:48658..49561(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA7 | ||
Ensembl ID: | ENSETEG00000000096 | ||
Aliases: | None | ||
Description: | karyopherin alpha 7 (importin alpha 8) [Source:HGNC Symbol;Acc:21839] |
Percent Identity: | 89.44 % |
Parental protein coverage: | 62.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DNTEFRDIVISSNIIPHLLALASTTIPITFLRNIAWTLSNLCRNKDPYPCEEAVKEMLPALLNLLQHDDV |
DNTEFRDIVISSNIIPHLLALASTTIPITFLRNIAWTLSNLCRNKDP..CEEAVKEMLPALLNLLQHDD. | |
Retrocopy | DNTEFRDIVISSNIIPHLLALASTTIPITFLRNIAWTLSNLCRNKDP--CEEAVKEMLPALLNLLQHDDI |
Parental | EVLSDACWALSYLTDGCQERIDQVVAAGVLPRMVELMKSSELRIMTPSLRTVGNIVTGTDQQTQKAIDAG |
EVLSDACWALSYL.DGCQER.DQVVA.GVL.RMVEL.KSSEL.IMTPSLRTV.NIVTGTDQQTQKAIDAG | |
Retrocopy | EVLSDACWALSYLPDGCQERTDQVVATGVLSRMVELRKSSELCIMTPSLRTVRNIVTGTDQQTQKAIDAG |
Parental | MLDVLVQLLRHPKSSIQKEAAWTLSNVAAGNCQHIEQLINHGMLPILVSLLRNGEFKVQKEAVWVVANFT |
MLDVLVQ.LRHPKSSIQKEAAWTLSNVAAGNCQH.EQLI..GMLPILVS.LRNGEFKVQKEA.WV.ANFT | |
Retrocopy | MLDVLVQHLRHPKSSIQKEAAWTLSNVAAGNCQHTEQLIKPGMLPILVSVLRNGEFKVQKEAGWVEANFT |
Parental | MGSTPDQLAMLIQSGVLKPLTSLLTCHDHKTVVIILQTIFYILQSAVKR--FEKFCLTLEQLGTIEKIEA |
MGS..DQLAMLIQSGVLKPLTSLL.CHDHKTV.I.LQT.F.ILQ.AV.....EK..LTLEQLGTIEKIEA | |
Retrocopy | MGSITDQLAMLIQSGVLKPLTSLLICHDHKTVIIVLQTTFCILQFAVNSHDMEKLRLTLEQLGTIEKIEA |
Parental | LQLHENHQIGQTAFNIIENLLTK |
LQLHENHQIGQTAFNIIENLLTK | |
Retrocopy | LQLHENHQIGQTAFNIIENLLTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015125 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000004243 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015943 | 1 retrocopy | |
Equus caballus | ENSECAG00000000554 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000096 | 1 retrocopy |
retro_etel_1548 ,
|
Echinops telfairi | ENSETEG00000004445 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000019546 | 1 retrocopy | |
Homo sapiens | ENSG00000185467 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038770 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010827 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031106 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000015434 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017369 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019446 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000009007 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000002998 | 2 retrocopies |