RetrogeneDB ID: | retro_cfam_849 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 19:22273543..22274532(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TADA1 | ||
Ensembl ID: | ENSCAFG00000015607 | ||
Aliases: | None | ||
Description: | transcriptional adaptor 1 [Source:HGNC Symbol;Acc:30631] |
Percent Identity: | 85.5 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | ATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTRCQ |
A..VSELEAAKKNL.EALGDNVKQ.WA.LKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTRCQ | |
Retrocopy | AASVSELEAAKKNLGEALGDNVKQHWAKLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTRCQ |
Parental | ILVSTPEGAGSLHWTGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVAKDPQDDDDLKLCSH |
ILVSTPEGAGSL.WTGGSAA.PGKPKG.KKLSSVRQKFDHRFQPQNPLSGAQ..VAKDPQDDDDLKLCSH | |
Retrocopy | ILVSTPEGAGSLPWTGGSAANPGKPKGRKKLSSVRQKFDHRFQPQNPLSGAQ-LVAKDPQDDDDLKLCSH |
Parental | TMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDILTSVVSRRKAYRLRDGHFKYAFGSN |
TMMLPTRGQLEGRMIVTA.E.GLDNVTEEAVSAVVYAVENHL.DILTS.VSRR.AYR...GHFKYA.GSN | |
Retrocopy | TMMLPTRGQLEGRMIVTA*EQGLDNVTEEAVSAVVYAVENHLTDILTSAVSRRQAYRSHAGHFKYALGSN |
Parental | VT-PQPYLKNSVVAYNNLIESPP-AFSAPC-AGQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMY |
VT.PQP.LK.S.V...N.....P...SAP..AGQNPASH.PPD.AEQQAA.L.ACSG.T.PASLPP.NM. | |
Retrocopy | VT<PQPSLK-SGVVAYNSVRASP<SASAPM<AGQNPASHRPPDGAEQQAARL-ACSGATVPASLPPANMH |
Parental | DLFEA-LQVHREVIPTHTVYALNIERIIMKLWHPNHEELQQDKVHRQRLAAKEGLLLC |
DL....LQVHREVIPTHTVYALN.ERIIMKLWHPNHEELQQDKVHRQRLAAKEGLLLC | |
Retrocopy | DLCDL<LQVHREVIPTHTVYALNVERIIMKLWHPNHEELQQDKVHRQRLAAKEGLLLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 16 .25 RPM |
SRP017611_brain | 0 .00 RPM | 15 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .43 RPM |
SRP017611_liver | 0 .00 RPM | 5 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015607 | 1 retrocopy |
retro_cfam_849 ,
|
Choloepus hoffmanni | ENSCHOG00000012658 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025598 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018606 | 1 retrocopy | |
Homo sapiens | ENSG00000152382 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008168 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026563 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007621 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000557 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001627 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007283 | 1 retrocopy |