RetrogeneDB ID: | retro_chof_602 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_125747:3459..4097(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TADA1 | ||
Ensembl ID: | ENSCHOG00000012658 | ||
Aliases: | None | ||
Description: | transcriptional adaptor 1 [Source:HGNC Symbol;Acc:30631] |
Percent Identity: | 74.88 % |
Parental protein coverage: | 70.43 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | YWVNLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTRCQILVTP--GAGSLPWTGGSAAKPGK |
Y..NLKL.FKQKISKEEFDLE.HRL.T.DNVH.HNDFLLAI.T.CQILV....GAGSLPWTG.SAAK.GK | |
Retrocopy | Y*ANLKL*FKQKISKEEFDLETHRLTTLDNVHFHNDFLLAIRTCCQILVSTLEGAGSLPWTGDSAAKTGK |
Parental | PKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVAKDPQDDDDLKLCSHTMMLPTR-GQLEGRMIVTAYEHGL |
PKGK.K.SSV.QKFDHRFQPQNPLSGAQQFVAKDPQ.DDDLKLCSHTM.LPT...QL.GRMIV.AYEHGL | |
Retrocopy | PKGKRKFSSVHQKFDHRFQPQNPLSGAQQFVAKDPQVDDDLKLCSHTMVLPTH<CQL*GRMIVAAYEHGL |
Parental | DNVTEEAVSAVVYAVENHLKDILTSVVSRRKAYRLRDGHFKYAFGNNVTPQPYLKNSVVAYNSLIESPPA |
DNVT.EA.SAVV..VE...KDILTSVV.RRK.Y.L.DG.FKYAF..NV.PQPYL.NSVV........... | |
Retrocopy | DNVTKEALSAVVHTVEDYVKDILTSVVPRRKVYQL*DGCFKYAFSSNVIPQPYL-NSVVLQQFNRKPSSL |
Parental | FSAPC |
FS..C | |
Retrocopy | FSSLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015607 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012658 | 1 retrocopy |
retro_chof_602 ,
|
Cavia porcellus | ENSCPOG00000025598 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018606 | 1 retrocopy | |
Homo sapiens | ENSG00000152382 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008168 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026563 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007621 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000557 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001627 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007283 | 1 retrocopy |