RetrogeneDB ID: | retro_mmus_865 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:56667199..56667699(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tada1 | ||
Ensembl ID: | ENSMUSG00000026563 | ||
Aliases: | Tada1, 2900026B15Rik, D1Ertd251e, Staf42, Tada1l | ||
Description: | transcriptional adaptor 1 [Source:MGI Symbol;Acc:MGI:1196415] |
Percent Identity: | 51.16 % |
Parental protein coverage: | 50.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LSSVRQKFDHRFQPQNPLSGAQQFVAKEPQGDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEA |
LSSV..KFD.R..P..PL......V.KEPQ..D.LKL.S..M.L.T.G..EGRM.V...EH..DN..EEA | |
Retrocopy | LSSVQ*KFDRRLLPPSPLWSVL-LVVKEPQSGDGLKLHSCAMKLSTQGSREGRMMV--HEHWPDNIAEEA |
Parental | VSAVVYAVENHLKDILTSVVSRRKAYRVRDGHFKYAFGSNVT-PQPYLKNSVVAYNNLVEGPPAFSAPCA |
.SAV.YA..NHLKD.LT...SR.KAY...DG.F...F......PQP...N.VV.YNNLV..PP.FS.... | |
Retrocopy | ASAVIYAGQNHLKDNLTPAESRSKAYWFGDGYFNCTFDKSMA<PQPFM-NRVVTYNNLVKSPPVFSVCQD |
Parental | NQ-SPASQPHPDDAEQQAAFLLACSGDTLPAS |
.Q....S.P.PD.AEQQ...LL..SG..L..S | |
Retrocopy | SQIKSSSPPQPDKAEQQSPLLLVQSGHILLVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 37 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 35 .82 RPM |
SRP007412_heart | 0 .00 RPM | 10 .55 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .42 RPM |
SRP007412_liver | 0 .00 RPM | 12 .94 RPM |
SRP007412_testis | 0 .00 RPM | 26 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015607 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012658 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025598 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018606 | 1 retrocopy | |
Homo sapiens | ENSG00000152382 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008168 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026563 | 1 retrocopy |
retro_mmus_865 ,
|
Otolemur garnettii | ENSOGAG00000007621 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000557 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001627 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007283 | 1 retrocopy |