RetrogeneDB ID: | retro_dnov_1293 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_17716:42018..42633(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TADA1 | ||
Ensembl ID: | ENSDNOG00000018606 | ||
Aliases: | None | ||
Description: | transcriptional adaptor 1 [Source:HGNC Symbol;Acc:30631] |
Percent Identity: | 69.52 % |
Parental protein coverage: | 62.09 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLA-ILTRCQILVSTPEGAG |
...S..L..........LKL.FK.KISK.EFDLEAHRL.TQDN...H..FLL..IL...QI.VSTPEGAG | |
Retrocopy | RHTSDQLSSLMAHTMVILKL*FKHKISKDEFDLEAHRLHTQDNL--HSPFLLG>ILPLSQIMVSTPEGAG |
Parental | SLPWTGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVAKDPQDDDDLKLC-SHTMMLPTRGQ |
SLPW.GGSA.KPGKPKGKKKLSSV.Q.FD.RFQ.QNPLSGAQQFVAK.PQDDDDLKLC.SH.MMLPT.GQ | |
Retrocopy | SLPWKGGSADKPGKPKGKKKLSSVHQRFDCRFQLQNPLSGAQQFVAKRPQDDDDLKLC<SHIMMLPTQGQ |
Parental | LEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDILSSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKN |
LEGRM.VT..EH.LD..T.EA.SAVV.AVENH.KDIL..VVS.RK.Y.L.....K..FGSNVTPQPY.K. | |
Retrocopy | LEGRMVVTVKEHELDHITREAASAVVDAVENHFKDILT*VVSGRKDYWL*ES-LKMCFGSNVTPQPYFKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 9 .14 RPM |
SRP012922_cerebellum | 0 .00 RPM | 18 .15 RPM |
SRP012922_heart | 0 .00 RPM | 6 .03 RPM |
SRP012922_kidney | 0 .00 RPM | 9 .31 RPM |
SRP012922_liver | 0 .00 RPM | 7 .59 RPM |
SRP012922_lung | 0 .15 RPM | 17 .87 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 8 .31 RPM |
SRP012922_spleen | 0 .00 RPM | 15 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015607 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012658 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025598 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018606 | 1 retrocopy |
retro_dnov_1293 ,
|
Homo sapiens | ENSG00000152382 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008168 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026563 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007621 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000557 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001627 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007283 | 1 retrocopy |