RetrogeneDB ID: | retro_pabe_3243 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:6049340..6050289(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TADA1 | ||
Ensembl ID: | ENSPPYG00000000557 | ||
Aliases: | None | ||
Description: | transcriptional adapter 1 [Source:RefSeq peptide;Acc:NP_001125101] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 94.64 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MATFVSELEAAKKNLSEALGDNVKQYWANL-KLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTR |
MATFVSELE.AKKNLSEA.GDNV.QYWANL.KLWFKQKISKE.FDLE.HRLLT.DNVHSHNDF.LAILT. | |
Retrocopy | MATFVSELEVAKKNLSEAPGDNVNQYWANL<KLWFKQKISKEDFDLETHRLLT*DNVHSHNDFFLAILTH |
Parental | CQILVSTPDGAGSLP-WPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVAKDPQDDDDLKL |
CQILVST..GAGSLP.W.GGSAAKPGKP.GKKKLSSV.QKFDHRFQPQNPL..AQQFVAKDPQDDD.LKL | |
Retrocopy | CQILVSTLEGAGSLP<WTGGSAAKPGKPNGKKKLSSVCQKFDHRFQPQNPLPRAQQFVAKDPQDDDNLKL |
Parental | CSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDILTSVVSRRKAYRLRDGHFKYAF |
CSHTMMLPT.G.LEGRM.V..YEHGLDNVT.EAVSA.VYAVENH.KDILTSVVSRRKAY.L.D.HFKYAF | |
Retrocopy | CSHTMMLPTQG*LEGRMTVNTYEHGLDNVTKEAVSALVYAVENHPKDILTSVVSRRKAYWL*DDHFKYAF |
Parental | GSNVTPQPYLKNSVVAYNNLNRNPPAFTAPCAGQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMY |
.SNVTPQPYLKN.VVA.NNL...P.AFTAPCAGQNPASHPPPD.A.QQ.A.LLACSGDT..ASLPPVNMY | |
Retrocopy | CSNVTPQPYLKNNVVA*NNLI*SPQAFTAPCAGQNPASHPPPDEAKQQTAFLLACSGDTPSASLPPVNMY |
Parental | DPFLKLLQVHREVIPTHTVYALNIERIITKLWHPNHEELQ |
..F...LQ.H.EVIP.HTVYALNIERII.K.WHPN.EEL. | |
Retrocopy | ELF-EVLQIHKEVIPSHTVYALNIERIIMKFWHPNYEELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 8 .02 RPM |
SRP007412_cerebellum | 0 .73 RPM | 8 .27 RPM |
SRP007412_heart | 0 .06 RPM | 1 .75 RPM |
SRP007412_kidney | 0 .03 RPM | 3 .71 RPM |
SRP007412_liver | 0 .03 RPM | 1 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3928 |
Pan troglodytes | retro_ptro_2671 |
Gorilla gorilla | retro_ggor_2644 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015607 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012658 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025598 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018606 | 1 retrocopy | |
Homo sapiens | ENSG00000152382 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008168 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026563 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007621 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000557 | 1 retrocopy |
retro_pabe_3243 ,
|
Pan troglodytes | ENSPTRG00000001627 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007283 | 1 retrocopy |