RetrogeneDB ID: | retro_hsap_3928 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:5706218..5707164(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253571 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TADA1 | ||
Ensembl ID: | ENSG00000152382 | ||
Aliases: | TADA1, ADA1, HFI1, STAF42, TADA1L, hADA1 | ||
Description: | transcriptional adaptor 1 [Source:HGNC Symbol;Acc:30631] |
Percent Identity: | 82.13 % |
Parental protein coverage: | 94.63 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MATFVSELEAAKKNLSEALGDNVKQYWANL-KLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTR |
MATFVSELE.AKKN.SEALGDNV.QYWANL.KLWFK.KI.KE.FDLE.HR.LT.DN.H.HNDFLLAILT. | |
Retrocopy | MATFVSELEVAKKNFSEALGDNVNQYWANL<KLWFKRKIRKEDFDLETHRFLT*DNMHPHNDFLLAILTH |
Parental | CQILVSTPDGAGSLPWPGGSAAKPG-KPKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVAKDPQDDDDLKL |
CQILVST..GAGSLPW.GGSAAKPG.K...K.K.....QKFDHRFQP..P.S.AQ.FVAKDPQDDDDLKL | |
Retrocopy | CQILVSTSEGAGSLPWMGGSAAKPG<KAQWKEK-AFFCQKFDHRFQPHSPFSRAQ*FVAKDPQDDDDLKL |
Parental | CSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDILTSVVSRRKAYRLRDGHFKYAF |
CSHTMML...G.LEGRM.VTAYEHGLDNVTEEA.SA.VYAVENH.KDILTSVVSRRKAYRLRD.HFKYAF | |
Retrocopy | CSHTMMLLIQGWLEGRMTVTAYEHGLDNVTEEAISALVYAVENHPKDILTSVVSRRKAYRLRDDHFKYAF |
Parental | GSNVTPQPYLKNSVVAYNNLIESPPAFTAPCAGQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMY |
GSN.TPQPYLKN.VVA.NNLI.SP.AFTAPCAGQNPASHPPPD.AEQQAA.LLACSGDTL.ASL...NMY | |
Retrocopy | GSNLTPQPYLKNNVVA*NNLI*SPQAFTAPCAGQNPASHPPPDEAEQQAAFLLACSGDTLSASLSAANMY |
Parental | DLFEALQVHREVIPTHTVYALNIERIITKLWHPNHEELQ |
.LFEAL.VHREVIPTHTVYA.NIERII.K.WHPNHEEL. | |
Retrocopy | ELFEALRVHREVIPTHTVYAVNIERIIMKVWHPNHEELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 6 .76 RPM |
bodymap2_adrenal | 0 .10 RPM | 14 .43 RPM |
bodymap2_brain | 0 .00 RPM | 24 .68 RPM |
bodymap2_breast | 0 .00 RPM | 8 .07 RPM |
bodymap2_colon | 0 .00 RPM | 9 .32 RPM |
bodymap2_heart | 0 .00 RPM | 8 .36 RPM |
bodymap2_kidney | 0 .00 RPM | 15 .04 RPM |
bodymap2_liver | 0 .00 RPM | 12 .53 RPM |
bodymap2_lung | 0 .00 RPM | 9 .86 RPM |
bodymap2_lymph_node | 0 .00 RPM | 13 .23 RPM |
bodymap2_ovary | 0 .00 RPM | 15 .36 RPM |
bodymap2_prostate | 0 .00 RPM | 15 .52 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 11 .64 RPM |
bodymap2_testis | 0 .00 RPM | 19 .27 RPM |
bodymap2_thyroid | 0 .00 RPM | 14 .46 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 17 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2671 |
Gorilla gorilla | retro_ggor_2644 |
Pongo abelii | retro_pabe_3243 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015607 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012658 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025598 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018606 | 1 retrocopy | |
Homo sapiens | ENSG00000152382 | 1 retrocopy |
retro_hsap_3928 ,
|
Gorilla gorilla | ENSGGOG00000008168 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026563 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007621 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000557 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001627 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007283 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |