RetrogeneDB ID: | retro_cfam_857 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 19:4865306..4865567(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000003755 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DBI | ||
Ensembl ID: | ENSCAFG00000004895 | ||
Aliases: | DBI, ACBP, EP | ||
Description: | Canis lupus familiaris diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) (DBI), mRNA. [Source:RefSeq mRNA;Acc:NM_001197047] |
Percent Identity: | 87.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSQAEFDKAAEDVKHLKTKPADDEMLYIYSHYKQATVGDINTERPGLLDLRGKAKWDAWNQLKGTSKEDA |
MSQAEFDKA.EDVKHL.TKPADDEML.IYSHYKQAT.GD.NTE.PGLLDLRGKAKWDAWN.LK.TSKE.A | |
Retrocopy | MSQAEFDKATEDVKHLETKPADDEMLFIYSHYKQATIGDVNTEWPGLLDLRGKAKWDAWNHLKRTSKENA |
Parental | MKAYVNKVEDLKKKYGI |
MKAY.NKVEDLKKKYG. | |
Retrocopy | MKAYINKVEDLKKKYGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 333 .22 RPM |
SRP017611_brain | 0 .08 RPM | 73 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 701 .51 RPM |
SRP017611_liver | 0 .00 RPM | 196 .51 RPM |