RetrogeneDB ID: | retro_rnor_879 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 12:46711216..46711471(+) | ||
Located in intron of: | ENSRNOG00000050710 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000030813 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dbi | ||
Ensembl ID: | ENSRNOG00000046889 | ||
Aliases: | Dbi, Acbp, Acoabp3, Ep, Odn, RNACOABP3, Ttn | ||
Description: | acyl-CoA-binding protein [Source:RefSeq peptide;Acc:NP_114054] |
Percent Identity: | 85.88 % |
Parental protein coverage: | 98.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QADFDKAAEEVKRLKTQPTDEEMLFIYSHFKQATVGDVNTDRPGLLDLKGKAKWDSWNKLKGTSKENAMK |
QA.FDKAAEEVK.LK.QPT.EEML..YSHFKQATVGDVNTDRPGLLDLKGKAKWD..N.LKGTSK.N.MK | |
Retrocopy | QAEFDKAAEEVKCLKSQPTEEEMLLLYSHFKQATVGDVNTDRPGLLDLKGKAKWDALNELKGTSKKNTMK |
Parental | TYVEKVEELKKKYGI |
TYVEK.EELKKKYGI | |
Retrocopy | TYVEKAEELKKKYGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 51 .12 RPM |
SRP017611_kidney | 0 .07 RPM | 133 .14 RPM |
SRP017611_liver | 0 .00 RPM | 149 .00 RPM |