RetrogeneDB ID: | retro_eeur_33 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_1739:14195..14452(-) | ||
Located in intron of: | ENSEEUG00000013321 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DBI | ||
Ensembl ID: | ENSEEUG00000012115 | ||
Aliases: | None | ||
Description: | diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:HGNC Symbol;Acc:2690] |
Percent Identity: | 75.28 % |
Parental protein coverage: | 86. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | TEADFEKAAEEVKNLKTKPTDEEMLFIYSRYKQATVGDVNTERP-GMLDFKGKAKWDSWNEI-KGTSKED |
...DFEKAAEEVKNLKTKPTDE.ML..Y..YKQATVGD.NTE.P.G.LDFK..AKWDS.NEI.KGTS.ED | |
Retrocopy | SQPDFEKAAEEVKNLKTKPTDEDMLLLYRHYKQATVGDGNTEGP>GLLDFKDRAKWDS*NEI<KGTSEED |
Parental | AMKAYIDKVEELKK-KYGV |
AMKAY.D.VEEL...KYGV | |
Retrocopy | AMKAYMDNVEELQE<KYGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .64 RPM | 240 .59 RPM |
SRP017611_kidney | 1 .69 RPM | 567 .49 RPM |
SRP017611_liver | 1 .13 RPM | 232 .64 RPM |