RetrogeneDB ID: | retro_chof_1025 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_185877:1926..2217(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRELID1 | ||
Ensembl ID: | ENSCHOG00000002251 | ||
Aliases: | None | ||
Description: | PRELI domain containing 1 [Source:HGNC Symbol;Acc:30255] |
Percent Identity: | 60.2 % |
Parental protein coverage: | 87.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NSGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTFVETAKEAK-EN |
N..WT.I..EAW.SSSLFG........GL..FKSN.TKTM..F.Y.L..LQGEAPSKTFVET.KEAK... | |
Retrocopy | NRDWTKIHQEAWISSSLFGYP-GLSRCGLT*FKSNMTKTMRSFDYFLTQLQGEAPSKTFVETTKEAKVKT |
Parental | KETALAATEKAKDLAN-AATKQQQQQQF |
KE.A...TEK.KDL.N.AAT...QQ..F | |
Retrocopy | KEMAPTTTEKSKDLVNMAATRKRQQLKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002251 | 1 retrocopy |
retro_chof_1025 ,
|
Callithrix jacchus | ENSCJAG00000006953 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000025788 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017550 | 1 retrocopy | |
Equus caballus | ENSECAG00000023460 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011762 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001738 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000007008 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000009046 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004804 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021486 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000011455 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000016410 | 8 retrocopies |