RetrogeneDB ID: | retro_mmus_2672 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:99108379..99108717(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prelid1 | ||
Ensembl ID: | ENSMUSG00000021486 | ||
Aliases: | Prelid1, 2610524G07Rik, Preli | ||
Description: | PRELI domain containing 1 [Source:MGI Symbol;Acc:MGI:1913744] |
Percent Identity: | 64.04 % |
Parental protein coverage: | 52.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LMVVEERCVYCVNSDNSGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAP |
L.VVE..C.YC..S..S.W.EI...A.VSSSLF.VSR..Q.FGLA.F.SNV.K..KGFEYILAKL..EAP | |
Retrocopy | LVVVEKHCIYCETSNDSCWIEIPWQA*VSSSLFDVSRGAQGFGLACFISNVIKMLKGFEYILAKLHDEAP |
Parental | SKTL-VETAKEAKEKAKETALAATEKAKDLANKAATKQQQRQLV |
SKTL.VET..E.KE.AKET.LAATEK.KDLA..A.T..QQ.... | |
Retrocopy | SKTL<VETSIETKETAKETVLAATEKGKDLAHEATTT*QQQKIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 29 .44 RPM |
SRP007412_heart | 0 .00 RPM | 12 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 53 .88 RPM |
SRP007412_liver | 0 .00 RPM | 55 .19 RPM |
SRP007412_testis | 0 .00 RPM | 7 .91 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_995 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002251 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006953 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000025788 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017550 | 1 retrocopy | |
Equus caballus | ENSECAG00000023460 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011762 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001738 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000007008 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000009046 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004804 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021486 | 7 retrocopies |
retro_mmus_1316, retro_mmus_2079, retro_mmus_2236, retro_mmus_2394, retro_mmus_2672 , retro_mmus_449, retro_mmus_866,
|
Otolemur garnettii | ENSOGAG00000011455 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000016410 | 8 retrocopies |