Parental gene:

PRELID1, ENSCPOG00000025788

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_17:23042544..23046022(+)


>ENSCPOG00000025788
ATGGTGAAGTATTTCCTGGGTCACAGCGTGCTCCGAAGTTCTTGGGACCAAGTGTTCGCTGCCTTCTGGCAGCGTTACCC
GAATCCCTACAGCAAACATGTCTTGACGGAAGACATAGTACACCGGGAGGTGACCCCTGACCAGAAGCTCCTGTCCCGGA
GACTCCTGACCAAGACCAACAGGATGCCCCGATGGGCAGAACGACTGTTTCCTGCCAACGTTGCTCACTCGGTGTACATC
CTGGAGGACTCTATAGTGGACCCACAGAATCAGACCATGACCACCTTCACTTGGAACATCAACCATGCCCGGCTGATGGT
GGTGGAGGAACGATGTGTTTACTGTGTGAACTCCGACAACAGTGGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCT
CTAGCTTATTTGGCGTCTCCAGAGCTGTCCAGGAATTTGGCCTCGCCCGGTTCAAAAGTAATGTGACCAAGACTATGAAG
GGCTTTGAATACATTTTGGCCAAGCTGCAAGGCGAGGCCCCTTCCAAAACACTTGTGGAGACAGCCAAGGAAGCCAAGGA
GAAGGCAAAGGAGACAGCGCTGGCAGCTACAGAAAAGGCCAAGGACCTCGCCAACAAGGCTGCCACCAAGCAGCAGCAGC
AACAACAACAGTTCGTGTAG

Library Parental gene expression (RPM)
SRP017611_liver 26 .25 RPM
SRP017611_kidney 51 .92 RPM
SRP017611_brain 22 .49 RPM
SRP040447_lung 52 .26 RPM
SRP040447_skeletal_muscle 12 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002251 ortholog_one2one 1 retrogene
retro_chof_1025,
Callithrix jacchus ENSCJAG00000006953 possible_ortholog 5 retrogenes
retro_cjac_1131, retro_cjac_1689, retro_cjac_2401, retro_cjac_3359, retro_cjac_835,
Dasypus novemcinctus ENSDNOG00000017550 ortholog_one2one 1 retrogene
retro_dnov_637,
Equus caballus ENSECAG00000023460 ortholog_one2one 1 retrogene
retro_ecab_467,
Gorilla gorilla ENSGGOG00000011762 possible_ortholog 3 retrogenes
retro_ggor_2404, retro_ggor_302, retro_ggor_9,
Macropus eugenii ENSMEUG00000001738 ortholog_one2one 12 retrogenes
retro_meug_1194, retro_meug_1541, retro_meug_1618, retro_meug_1725, retro_meug_1726, retro_meug_2054, retro_meug_274, retro_meug_666, retro_meug_681, retro_meug_854, retro_meug_895, retro_meug_918,
Myotis lucifugus ENSMLUG00000007008 possible_ortholog 2 retrogenes
retro_mluc_239, retro_mluc_64,
Macaca mulatta ENSMMUG00000009046 possible_ortholog 2 retrogenes
retro_mmul_1822, retro_mmul_2457,
Monodelphis domestica ENSMODG00000004804 ortholog_one2many 3 retrogenes
retro_mdom_1529, retro_mdom_221, retro_mdom_596,
Mus musculus ENSMUSG00000021486 ortholog_one2one 7 retrogenes
retro_mmus_1316, retro_mmus_2079, retro_mmus_2236, retro_mmus_2394, retro_mmus_2672, retro_mmus_449, retro_mmus_866,
Otolemur garnettii ENSOGAG00000011455 possible_ortholog 4 retrogenes
retro_ogar_1352, retro_ogar_2025, retro_ogar_3006, retro_ogar_665,
Rattus norvegicus ENSRNOG00000016410 ortholog_one2one 8 retrogenes
retro_rnor_1138, retro_rnor_1166, retro_rnor_1243, retro_rnor_1906, retro_rnor_2178, retro_rnor_2305, retro_rnor_637, retro_rnor_995,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_231 65.24 82.19
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Download FASTA sequences of all ENSCPOG00000025788 retrocopies