RetrogeneDB ID: | retro_chof_21 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_20788:8703..9591(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000009227 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSCHOG00000000759 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta [Source:HGNC Symbol;Acc:130] |
Percent Identity: | 87.07 % |
Parental protein coverage: | 77.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
.....ALV.DNGSG.CKAGF.GDDAPRAVFPS.VGRPRH.GVMVGMGQKD.YVGDEAQSKRGILTLKYPI | |
Retrocopy | DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHHGVMVGMGQKDCYVGDEAQSKRGILTLKYPI |
Parental | EHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS |
EHG..TNWDDMEKIWHH.FYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FN.PAMYVAIQAVLS | |
Retrocopy | EHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRD |
LYASGRTTGIV.DSGDGVTH.VPIYEGYALPHAI.RLDLAGRDLTDYLMKILTERGY.F.TTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVRD |
Parental | IKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNS |
.KEKLCYVALDFE.EM..AA.SSSLE.SYELPDGQVITIGNERFRCPE..FQPSF.G.ES.GIHE.T.NS | |
Retrocopy | VKEKLCYVALDFEQEMVSAAASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESTGIHEATFNS |
Parental | IMKCDIDIRKDLYA |
IMKCD.DIRKDLYA | |
Retrocopy | IMKCDVDIRKDLYA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies |
retro_chof_1909, retro_chof_2042, retro_chof_21 ,
|
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |