RetrogeneDB ID: | retro_tsyr_9 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_9623:18193..19324(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000013181 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSTSYG00000008155 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta [Source:HGNC Symbol;Acc:130] |
Percent Identity: | 88.24 % |
Parental protein coverage: | 99.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
.E...ALV.DNGSG.CKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYPI | |
Retrocopy | DEELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPI |
Parental | EHGIITNWDDMEKIWHHSLYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS |
EHG..TNW.DMEKIW.H..YNELRV.P.EHP.LLTEAPLNPK.NREKMTQIMFE.FN.PAMYVAIQAVLS | |
Retrocopy | EHGVVTNWGDMEKIWYHTFYNELRVSPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRD |
LYASGRTTG.V.DSGDGVTH.VPIYEGYALPH.I.RLDLAGRDLTDYLMKILTERGYSF.TTAEREIVRD | |
Retrocopy | LYASGRTTGLVMDSGDGVTHTVPIYEGYALPHGILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
Parental | IKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNS |
.KEKLCYVALDFE.EMATAA.SSSLE.SYELPDGQVITIGNERFRCPE..FQPSF.G.ES.GIHETT.NS | |
Retrocopy | VKEKLCYVALDFEQEMATAAASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNS |
Parental | IMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
IMKCD.DIRKDLYAN.VLSGG.TMYPGIADRMQKEI..LAPSTMKIKII.PPERKYSVWIGGSILASLST | |
Retrocopy | IMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIITLAPSTMKIKIISPPERKYSVWIGGSILASLST |
Parental | FQQMWISKQEYDEAGPSIVHRKCF |
FQQMWISKQEYDEAGP.IVHRKCF | |
Retrocopy | FQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000000406 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |