RetrogeneDB ID: | retro_ocun_919 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:60707705..60708825(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000010443 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSOCUG00000008193 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta (ACTA2), mRNA [Source:RefSeq mRNA;Acc:NM_001101682] |
Percent Identity: | 90.96 % |
Parental protein coverage: | 79.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE-AQSKRGILTLKYP |
EE...ALV.DNGSG.CKAGFA.DDAPRAVF.SIVG.PRHQGVMVGMGQKDSYVG.E.AQSKRGILTLKYP | |
Retrocopy | EEEIAALVIDNGSGMCKAGFARDDAPRAVFSSIVGCPRHQGVMVGMGQKDSYVGGE<AQSKRGILTLKYP |
Parental | IEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL |
IEHGI.TNWDDMEKIWHH.FYNELRVAPEEHP.LLTEAPLNPKANREKMTQIMFETFN.PAMYVAIQAVL | |
Retrocopy | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
Parental | SLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR |
SLYASGRTTGIV.DSGDGVTH.VPIYEGYALPHAI.RLDLAGR.LTDYLMKILTERGYSF.TTAE.EI.R | |
Retrocopy | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRNLTDYLMKILTERGYSFTTTAEHEIMR |
Parental | DIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYN |
DIKEKLCYVALDFE.EMATAASSSSLEKSYELPDGQVITIGN.RFRCPE.LFQPSF.GMES.GIHETT.N | |
Retrocopy | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNKRFRCPEALFQPSFLGMESCGIHETTFN |
Parental | SIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY-SVWIGGSILASL |
SIMKCD.DIRKDLYAN.VL.GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY..VWIGGSILASL | |
Retrocopy | SIMKCDVDIRKDLYANTVLLGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY<LVWIGGSILASL |
Parental | STFQQMWISKQEYDEAGPSIVHRKCF |
STFQQMWISKQEY.E.GPSIVHRKCF | |
Retrocopy | STFQQMWISKQEYGESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 259 .83 RPM | 17 .99 RPM |
SRP017611_kidney | 211 .23 RPM | 42 .77 RPM |
SRP017611_liver | 34 .84 RPM | 22 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004074 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005867 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies |
retro_ocun_1306, retro_ocun_1421, retro_ocun_919 ,
|
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |