RetrogeneDB ID: | retro_meug_1374 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold384:37699..38372(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSMEUG00000010843 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta [Source:HGNC Symbol;Acc:130] |
Percent Identity: | 72.81 % |
Parental protein coverage: | 65.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TQIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCY |
T.IV.DSGDGVT..VPIYE.YALPH......LAG.DLTDYL.KIL.ERG.SF.TT.ER.IV...KE.LCY | |
Retrocopy | TGIVMDSGDGVTQTVPIYEAYALPHH-PPFHLAGSDLTDYLTKILKERGSSFTTTVERDIVLNNKENLCY |
Parental | VALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID |
V.LDFE.EMA..ASSSSLEKSYE.P.GQ.ITIGNERF.C.E.LFQP.F.G.ES.GIHETT.NSIMK.D.D | |
Retrocopy | VILDFEQEMAIDASSSSLEKSYEFPNGQFITIGNERFGCTEALFQPFFLGIESCGIHETTFNSIMKYDVD |
Parental | IRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKI-KIIAPPERKYSVWIGGSILASLSTFQQMWI |
I.K.LYAN..LSGG.TM.PGIA.RMQKEI.ALAPS..KI.KII.PPE.KYS...GGSIL.SLSTFQQMW. | |
Retrocopy | IYKGLYANTILSGGNTMHPGIANRMQKEIAALAPSILKI>KIIVPPEPKYST--GGSILVSLSTFQQMWM |
Parental | SKQEYDEAGPSIVHRKCF |
.KQEYD..GPSIV.RK.F | |
Retrocopy | RKQEYDKSGPSIVYRKYF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |