RetrogeneDB ID: | retro_tbel_3014 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_126402:84026..85149(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000004144 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSTBEG00000017616 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta [Source:HGNC Symbol;Acc:130] |
Percent Identity: | 88.27 % |
Parental protein coverage: | 99.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPS-IVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
.....ALV.DNGSG.CKAGF.GDDAPRAVFPS..VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYP | |
Retrocopy | DDELSALVVDNGSGMCKAGFGGDDAPRAVFPS>MVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYP |
Parental | IEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL |
IEHG..TNWDDMEKIWHH.FYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FN.PAMYVAIQAVL | |
Retrocopy | IEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVL |
Parental | SLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR |
SLYASGRTTGIV.DSGDGVTH.VPIYEGYAL.H.I.RLDLAGRDLTDYLMKILTERGY.F.TTAEREIVR | |
Retrocopy | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALTHGILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVR |
Parental | DIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYN |
D.KEKLCYVALDFE.EM..AA.SSSLE.SYELPDGQVITIGNERFRCPE..FQPSF.G.ES.GIHETT.N | |
Retrocopy | DVKEKLCYVALDFEQEMVSAAASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFN |
Parental | SIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SIMKCD.DIRKDLYAN.VLSGG.TMYPGIADRMQKEI..LAPSTMKIKIIAPPERKYSVWIGGSILASLS | |
Retrocopy | SIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIITLAPSTMKIKIIAPPERKYSVWIGGSILASLS |
Parental | TFQQMWISKQEYDEAGPSIVHRKCF |
TFQQMWISKQEYDEAGP.IVHRKCF | |
Retrocopy | TFQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010781 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies |
retro_tbel_1555, retro_tbel_3014 , retro_tbel_4616,
|
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |