RetrogeneDB ID: | retro_ocun_1421 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:76668090..76669233(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSOCUG00000008193 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta (ACTA2), mRNA [Source:RefSeq mRNA;Acc:NM_001101682] |
Percent Identity: | 87.47 % |
Parental protein coverage: | 80.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AAAAMCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI |
A........D.TALV.DNGSG.CKAGFAGDDAPRAVF.SIVGRPRHQGVMVGM..KDSYVGDEAQSKRGI | |
Retrocopy | APTQLTMDDDITALVVDNGSGMCKAGFAGDDAPRAVFLSIVGRPRHQGVMVGMDHKDSYVGDEAQSKRGI |
Parental | LTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYV |
LTLKYPIEHGI.TN.D.MEKIWHH.FY.ELRVAPEEHP.LLTEAPLNPKANREKMTQIMFETFN..AMYV | |
Retrocopy | LTLKYPIEHGIVTN*DAMEKIWHHTFYHELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTLAMYV |
Parental | AIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTA |
AIQAVLSLYASGRTTGIV.DSGD.VTH.VPIYEGYALPH.I.RLDLAGRDLTDYLMKILTERGYSF.T.A | |
Retrocopy | AIQAVLSLYASGRTTGIVMDSGDRVTHTVPIYEGYALPHTILRLDLAGRDLTDYLMKILTERGYSFTTMA |
Parental | EREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRC-PETLFQPSFIGMESAG |
EREIVRDIKEKLCY.ALDFE.EMATAA.SSSLEKSYE.P.GQVITI.NERFRC.P..LFQPSF.GMES.G | |
Retrocopy | EREIVRDIKEKLCYLALDFEQEMATAANSSSLEKSYEPPNGQVITICNERFRC<PQALFQPSFLGMESCG |
Parental | IHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA-PPERKYSVWIG |
IHETT.NSIMKCD.DIRKDLYAN.VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA.PP.RKYSVWIG | |
Retrocopy | IHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA>PPQRKYSVWIG |
Parental | GSILASLSTFQQMWISKQEYDEAGPSIVHRKCF |
GSILASLS.FQQMWISKQE.DE.GPSIVHRKCF | |
Retrocopy | GSILASLSMFQQMWISKQEHDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 35 .65 RPM | 17 .99 RPM |
SRP017611_kidney | 31 .83 RPM | 42 .77 RPM |
SRP017611_liver | 18 .19 RPM | 22 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004074 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005867 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies |
retro_ocun_1306, retro_ocun_1421 , retro_ocun_919,
|
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |