Parental gene:

DKFZP469E0314, ENSPPYG00000002459

Aliases:None
Description:actin, aortic smooth muscle [Source:RefSeq peptide;Acc:NP_001126814]
Organism:Orangutan (Pongo abelii)
Coordinates:10:87613980..87631754(-)


>ENSPPYG00000002459
GAACACCACCCAGTGTGGAGAAGCCCAGCCAAGCACTGTCAGGAATCCTGTGAAGCAGCTCCAGCTATGTGTGAAGAAGA
GGACAGCACTGCCTTGGTGTGTGACAATGGTTCTGGGCTCTGTAAGGCCGGCTTTGCTGGGGATGATGCTCCCAGGGCTG
TTTTCCCATCCATCGTGGGACGTCCCAGACATCAGGGGGTGATGGTGGGAATGGGACAAAAAGACAGCTATGTGGGTGAC
GAAGCACAGAGCAAAAGAGGAATCCTGACCCTGAAGTACCCAATAGAACACGGCATCATCACCAACTGGGACGACATGGA
AAAGATCTGGCACCACTCTTTCTACAATGAGCTTCGTGTTGCCCCTGAAGAGCATCCCACCCTGCTCACGGAGGCGCCCC
TGAACCCCAAGGCCAACCGGGAGAAAATGACTCAGATTATGTTTGAGACTTTCAATGTCCCGGCCATGTATGTGGCTATC
CAGGCGGTGCTGTCCCTCTACGCCTCTGGACGCACAACTGGCATCGTGCTGGACTCTGGAGATGGTGTCACTCACAATGT
CCCCATCTATGAGGGCTATGCCTTGCCCCATGCCATCATGCGTCTGGATCTGGCTGGCCGAGATCTCACTGACTACCTCA
TGAAGATCCTTACTGAGCGTGGCTATTCCTTTGTTACTACTGCTGAGCGTGAGATTGTCCGGGACATCAAAGAGAAACTG
TGTTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACTGCCGCATCCTCCTCCTCCCTTGAGAAGAGTTACGAGTTGCC
TGATGGGCAAGTGATCACCATCGGAAATGAACGCTTCCGCTGCCCAGAGACCCTGTTCCAGCCATCCTTCATCGGGATGG
AGTCTGCAGGCATCCATGAAACCACCTACAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGACCTTTATGCTAAC
AATGTCCTATCAGGGGGCACCACTATGTACCCTGGCATTGCCGACCGAATGCAGAAGGAGATCACGGCCCTAGCACCCAG
CACCATGAAGATCAAGATCATTGCCCCTCCGGAGCGCAAATACTCTGTCTGGATCGGTGGCTCCATCCTGGCCTCTCTGT
CCACCTTCCAGCAGATGTGGATCAGCAAACAGGAATACGATGAAGCCGGGCCTTCCATTGTCCATCGCAAATGCTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 70 .72 RPM
SRP007412_cerebellum 7 .66 RPM
SRP007412_heart 52 .26 RPM
SRP007412_kidney 195 .96 RPM
SRP007412_liver 205 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000759 ortholog_one2one 3 retrogenes
retro_chof_1909, retro_chof_2042, retro_chof_21,
Dasypus novemcinctus ENSDNOG00000006719 ortholog_one2one 1 retrogene
retro_dnov_32,
Echinops telfairi ENSETEG00000008526 possible_ortholog 1 retrogene
retro_etel_41,
Macropus eugenii ENSMEUG00000010843 ortholog_one2one 1 retrogene
retro_meug_1374,
Myotis lucifugus ENSMLUG00000015509 ortholog_one2one 3 retrogenes
retro_mluc_190, retro_mluc_427, retro_mluc_90,
Nomascus leucogenys ENSNLEG00000012233 ortholog_one2one 1 retrogene
retro_nleu_2313,
Oryctolagus cuniculus ENSOCUG00000008193 ortholog_one2one 3 retrogenes
retro_ocun_1306, retro_ocun_1421, retro_ocun_919,
Pongo abelii ENSPPYG00000002605 other_paralog 1 retrogene
retro_pabe_1930,
Pongo abelii ENSPPYG00000006318 other_paralog 1 retrogene
retro_pabe_1317,
Pongo abelii ENSPPYG00000008735 within_species_paralog 11 retrogenes
retro_pabe_1091, retro_pabe_1391, retro_pabe_1727, retro_pabe_2187, retro_pabe_2308, retro_pabe_2621, retro_pabe_2945, retro_pabe_3381, retro_pabe_3475, retro_pabe_3760, retro_pabe_600,
Pongo abelii ENSPPYG00000017336 within_species_paralog 23 retrogenes
retro_pabe_1281, retro_pabe_1292, retro_pabe_1575, retro_pabe_1610, retro_pabe_1772, retro_pabe_1816, retro_pabe_1911, retro_pabe_2042, retro_pabe_2168, retro_pabe_2175, retro_pabe_2188, retro_pabe_227, retro_pabe_2754, retro_pabe_2811, retro_pabe_2824, retro_pabe_2862, retro_pabe_2978, retro_pabe_309, retro_pabe_3563, retro_pabe_3567, retro_pabe_3746, retro_pabe_745, retro_pabe_86,
Sorex araneus ENSSARG00000005778 ortholog_one2one 1 retrogene
retro_sara_732,
Tupaia belangeri ENSTBEG00000017616 ortholog_one2one 3 retrogenes
retro_tbel_1555, retro_tbel_3014, retro_tbel_4616,
Tarsius syrichta ENSTSYG00000008155 ortholog_one2one 5 retrogenes
retro_tsyr_1282, retro_tsyr_2102, retro_tsyr_858, retro_tsyr_9, retro_tsyr_92,
Vicugna pacos ENSVPAG00000010621 possible_ortholog 3 retrogenes
retro_vpac_12, retro_vpac_355, retro_vpac_651,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3027 73.81 99.20
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Download FASTA sequences of all ENSPPYG00000002459 retrocopies