RetrogeneDB ID: | retro_chof_2104 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_49452:7243..7695(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMA16 | ||
Ensembl ID: | ENSCHOG00000006702 | ||
Aliases: | None | ||
Description: | translation machinery associated 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25638] |
Percent Identity: | 79.08 % |
Parental protein coverage: | 74.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EKLQWFHSHLDPKK-VKYSKKDACEL-IERYLNRFSDELEQIELHNSIKDRQGRKHHSRETVIKQTMARE |
EKL.WFH..LDP.K..KYSKKDACEL.IERYLN.FSDELEQIELHNSIKDRQGRK.HSRETVIKQTMA.E | |
Retrocopy | EKLWWFHN-LDPPK>IKYSKKDACEL>IERYLN*FSDELEQIELHNSIKDRQGRKYHSRETVIKQTMACE |
Parental | RQQ-YEGYGFXXXXXXXXXXXXXXXEWDIDLKKLPNIKTRKICANDAVPKKGKKKNIATVDKDLGELQLK |
.QQ.YEGYGF...............EWDIDLKKLPNIK.R.ICANDAVPKK.K.KNI.TVDKDLGELQLK | |
Retrocopy | QQQQYEGYGFEIPDTENESNLETFREWDIDLKKLPNIKMREICANDAVPKKCKRKNITTVDKDLGELQLK |
Parental | SETDDSDEEMTAV |
SETDDSDEEMTAV | |
Retrocopy | SETDDSDEEMTAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |