RetrogeneDB ID: | retro_mmus_299 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:17394936..17395429(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tma16 | ||
Ensembl ID: | ENSMUSG00000025591 | ||
Aliases: | Tma16, 1810029B16Rik | ||
Description: | translation machinery associated 16 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913532] |
Percent Identity: | 87.27 % |
Parental protein coverage: | 73.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SHLDMKKT--RYSKKDACELVERYLDRFSSELEQIELQNSIKDRQGRRHHSR-EAVIKQTLERERQQYEG |
SHLD......RYSKKDACEL.ERYLDRFSSELE.IEL..SIKDRQGRRHHSR.EAVIKQT.E.E.QQYEG | |
Retrocopy | SHLDXXXXXXRYSKKDACELIERYLDRFSSELE*IELHSSIKDRQGRRHHSR>EAVIKQTMEWEWQQYEG |
Parental | YGFEIPDILDSNTLQTFREWDFDLKKLPNIKMRKLCADDAVPKKRKQKNILNIEKDLGELELSGPTGATT |
YGFEIPDILDSNTLQTFREWDFDLK.LPNIKMRKLCAD.AVPKKRKQKNILNIEKDL.ELE.SG.TG.TT | |
Retrocopy | YGFEIPDILDSNTLQTFREWDFDLKRLPNIKMRKLCADNAVPKKRKQKNILNIEKDLEELEPSGQTGDTT |
Parental | DGKLEPASESSDTDEEMTPVPVSPH |
DGKLEPASESSDT.EEMTPVPVSPH | |
Retrocopy | DGKLEPASESSDTGEEMTPVPVSPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 7 .55 RPM |
SRP007412_cerebellum | 0 .04 RPM | 5 .12 RPM |
SRP007412_heart | 0 .00 RPM | 4 .11 RPM |
SRP007412_kidney | 0 .00 RPM | 4 .25 RPM |
SRP007412_liver | 0 .00 RPM | 3 .00 RPM |
SRP007412_testis | 0 .09 RPM | 4 .89 RPM |