RetrogeneDB ID: | retro_mmus_329 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:65028079..65028550(+) | ||
Located in intron of: | ENSMUSG00000025955 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000090042 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tma16 | ||
Ensembl ID: | ENSMUSG00000025591 | ||
Aliases: | Tma16, 1810029B16Rik | ||
Description: | translation machinery associated 16 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913532] |
Percent Identity: | 84.91 % |
Parental protein coverage: | 71.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MPKGLKGKMVGREKKVIHPYSRKAAQITRESHKQDKKERLKTEKALRLNLIGDKLQWFHSHLDMKKTR-Y |
MPKGLKGKMVG..K.VI.PYSRKAAQITRESHKQDKK.RL.TE.ALRLNLIGDKLQWFHS.LD.K....Y | |
Retrocopy | MPKGLKGKMVGWGKNVIDPYSRKAAQITRESHKQDKKQRLETERALRLNLIGDKLQWFHSYLDTKRPD>Y |
Parental | SKKDACELVERYLDRFSSELEQIELQNSIKDRQ-GRRHHSREAVIKQTLERERQQYEGYGFEIPDILDSN |
SKKDACEL.ERYLD.FSSELEQIEL.NSIKDRQ.G.RH.SREAVIKQT..RE.QQ.EGYGFEIPDILDSN | |
Retrocopy | SKKDACELIERYLDQFSSELEQIELHNSIKDRQ<GKRHPSREAVIKQTSKREQQQ*EGYGFEIPDILDSN |
Parental | TLQTFREWDFDLKKLPNIK |
T.QTFREWDFDLKKLPNIK | |
Retrocopy | TWQTFREWDFDLKKLPNIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 7 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .12 RPM |
SRP007412_heart | 0 .00 RPM | 4 .11 RPM |
SRP007412_kidney | 0 .00 RPM | 4 .25 RPM |
SRP007412_liver | 0 .00 RPM | 3 .00 RPM |
SRP007412_testis | 0 .96 RPM | 4 .89 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_75612 | 838 libraries | 112 libraries | 96 libraries | 18 libraries | 8 libraries |