RetrogeneDB ID: | retro_mmul_276 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:21080473..21081085(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000030262 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C5H4ORF43 | ||
Ensembl ID: | ENSMMUG00000004482 | ||
Aliases: | C5H4orf43, C4orf43, TMA16 | ||
Description: | None |
Percent Identity: | 96.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPKAPKGKSAGREKKVIHPYSRKAAQITREAHKQEKKEKLKNEKALRLNLIGEKLQWFQNHLDPQKNRYS |
MPKAPKGKSA.REKKVIHPYSRKAAQITR.AHKQEKKEKLKNEKALRLNLIGEKLQWFQNHLDPQKNRYS | |
Retrocopy | MPKAPKGKSAEREKKVIHPYSRKAAQITRKAHKQEKKEKLKNEKALRLNLIGEKLQWFQNHLDPQKNRYS |
Parental | KKDACQLIERYLNRFSSELEQIELHNSIRDRQGRRHCSRETVIKQTMERERQQYEGYGLEIPDILNASNL |
KKDACQLI.RYLNRFSSELEQI.LHNSIRDRQGR.HCS.ETVIKQTMERERQQYEGYGLEIPDILNASNL | |
Retrocopy | KKDACQLIDRYLNRFSSELEQIGLHNSIRDRQGRWHCSWETVIKQTMERERQQYEGYGLEIPDILNASNL |
Parental | KMFREWDFDLKKLPNIKMRKIGANDAIPKKCKRKTIITVDQDLGELELNDESSDSDEEMTAVA |
K.FREWDFDLKKLPNIKMRKIG.NDAIPKKCKRKTIITVDQDLGELELNDESSDSDEEMTAVA | |
Retrocopy | KTFREWDFDLKKLPNIKMRKIGTNDAIPKKCKRKTIITVDQDLGELELNDESSDSDEEMTAVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .45 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .82 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .16 RPM |
SRP007412_heart | 0 .00 RPM | 1 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .82 RPM |
SRP007412_liver | 0 .00 RPM | 1 .43 RPM |
SRP007412_testis | 0 .23 RPM | 2 .04 RPM |