Parental gene:

TMA16, ENSCPOG00000001119

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_1:54836365..54847241(-)


>ENSCPOG00000001119
CCTAAAGAACTCATGGGTAGAAGCCCAGGACTCATCCATCCATACAGTAGAAAAGCTGCTCAGATTGCGAGACATGCCCA
CAAACTAGAAAAGAAGGAAAGATTGAAGCATGAAAAGGCCTTACGTCTCAACCTTATTAGTGAAAAACTGCAGTGGTTTC
AAAATGAGCTGGATCCCCAAAAAGTGAGATATTCAAGGAAAGATGCTTGTCAGTTAGTTGAAAGGTACTTAAATCGGTTC
AGCAGTGAGCTGGAGCAGATTGAGTTACTTAACAGTATCAAGGACAGGCAGGGAAGGCGACACCATTCCCGGGAGATGTT
CATCAAGCAGACAATAGAGCGTGAGCGCCAGCAGTACGAAGGCTACGGTCTTGAAATTCCAGACATTTTACATTCAAGTA
GCCTGAAAACTTTTAGGGAATGGGATTTGGATCTGAAGAAATTACCAAACATTAAAATGAGAAGACTTTGTGCTAATGAT
GCATTTGCTAAGAAACACAAGAAGGAAGCTCAAAATTTAACTATTGACAAAGATTTAGGGCAGTTGGAATTAAAAGGAGA
GTCAAGTAACTCAGATGAAGAAATGACTCCTGTGACCTAA

Library Parental gene expression (RPM)
SRP017611_liver 5 .44 RPM
SRP017611_kidney 6 .28 RPM
SRP017611_brain 5 .58 RPM
SRP040447_lung 5 .85 RPM
SRP040447_skeletal_muscle 4 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006702 ortholog_one2one 2 retrogenes
retro_chof_1717, retro_chof_2104,
Dasypus novemcinctus ENSDNOG00000006820 ortholog_one2one 1 retrogene
retro_dnov_489,
Echinops telfairi ENSETEG00000009734 ortholog_one2one 1 retrogene
retro_etel_1378,
Homo sapiens ENSG00000198498 ortholog_one2one 2 retrogenes
retro_hsap_378, retro_hsap_879,
Gorilla gorilla ENSGGOG00000025324 ortholog_one2many 1 retrogene
retro_ggor_713,
Macropus eugenii ENSMEUG00000001134 ortholog_one2one 3 retrogenes
retro_meug_1830, retro_meug_1895, retro_meug_396,
Macaca mulatta ENSMMUG00000004482 ortholog_one2many 2 retrogenes
retro_mmul_184, retro_mmul_276,
Monodelphis domestica ENSMODG00000002170 ortholog_one2one 1 retrogene
retro_mdom_881,
Mus musculus ENSMUSG00000025591 ortholog_one2one 2 retrogenes
retro_mmus_299, retro_mmus_329,
Nomascus leucogenys ENSNLEG00000006466 ortholog_one2one 2 retrogenes
retro_nleu_1631, retro_nleu_2590,
Otolemur garnettii ENSOGAG00000001860 ortholog_one2one 1 retrogene
retro_ogar_3308,
Pongo abelii ENSPPYG00000015167 ortholog_one2one 1 retrogene
retro_pabe_329,
Pan troglodytes ENSPTRG00000023618 ortholog_one2one 2 retrogenes
retro_ptro_294, retro_ptro_3035,
Rattus norvegicus ENSRNOG00000014188 ortholog_one2one 3 retrogenes
retro_rnor_2309, retro_rnor_845, retro_rnor_846,
Sorex araneus ENSSARG00000003780 ortholog_one2one 1 retrogene
retro_sara_168,
Ictidomys tridecemlineatus ENSSTOG00000024763 ortholog_one2one 3 retrogenes
retro_itri_1085, retro_itri_1372, retro_itri_715,
Tupaia belangeri ENSTBEG00000017224 ortholog_one2one 7 retrogenes
retro_tbel_168, retro_tbel_2196, retro_tbel_2345, retro_tbel_2474, retro_tbel_3235, retro_tbel_3987, retro_tbel_4393,
Tarsius syrichta ENSTSYG00000008284 ortholog_one2one 1 retrogene
retro_tsyr_686,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_444 68.42 56.28
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000001119 retrocopies