RetrogeneDB ID: | retro_chof_830 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_15328:107..919(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PANK3 | ||
Ensembl ID: | ENSCHOG00000011633 | ||
Aliases: | None | ||
Description: | pantothenate kinase 3 [Source:HGNC Symbol;Acc:19365] |
Percent Identity: | 89.01 % |
Parental protein coverage: | 73.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RDKNFSTLHTVLCATGGGAYKFEKDFRTIGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEP |
R.KNFSTLHTVLCATG.GAY.FEKDF.TIGNL.L.KL.E.DCLVK.LLYIDSV.FNGQAECYYFANA... | |
Retrocopy | R*KNFSTLHTVLCATGSGAYRFEKDFGTIGNLCLPKLVEHDCLVKSLLYIDSVCFNGQAECYYFANAKLR |
Parental | ERCQK-MPFNLDDPYPLLVVNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLC-SLLTGCESFEEALEM |
....K.MPFNLDDPYPLLVVNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGL..SLLTGCESFEEALEM | |
Retrocopy | DPKPK>MPFNLDDPYPLLVVNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLW>SLLTGCESFEEALEM |
Parental | ASKGDSTQADKLVRDIYGGDYERFGLPGWAVASSFGNMIYKEKRESVSKEDLARATLVTITNNIGSVARM |
ASKGDSTQADKLVRDIYG.DYERFGLPGWAVASSFGNMIYKEKRESVSKEDLARATLVTITNNIGSVARM | |
Retrocopy | ASKGDSTQADKLVRDIYGEDYERFGLPGWAVASSFGNMIYKEKRESVSKEDLARATLVTITNNIGSVARM |
Parental | CAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVGALLGLPNFS |
CAVNEKINRVVFVGNF......SMKLLAY.LDYWSKGQLK.LFLEHE.YFGAVGALLGLPNFS | |
Retrocopy | CAVNEKINRVVFVGNFY-TSVFSMKLLAYVLDYWSKGQLKTLFLEHERYFGAVGALLGLPNFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011633 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015550 | 1 retrocopy | |
Homo sapiens | ENSG00000120137 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004947 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004896 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000016024 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017509 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016157 | 3 retrocopies |