RetrogeneDB ID: | retro_nleu_1430 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397292.1:23920031..23921141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PANK3 | ||
Ensembl ID: | ENSNLEG00000004896 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKIKDAKKPSFPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLEL |
M.IKDAKKP.FP.FG.D.GGTL.KLSYFEPIDITAEEEQEEVESLKS.RKYLTS.VA.GSTG.RD.HLEL | |
Retrocopy | MTIKDAKKPPFPRFGTDTGGTLAKLSYFEPIDITAEEEQEEVESLKSLRKYLTSDVACGSTGFRDEHLEL |
Parental | KDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHLHKLDEL- |
KD.TLFGRRG.LHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEK.FRTIGNLHLHKLDEL. | |
Retrocopy | KDFTLFGRRGSLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKHFRTIGNLHLHKLDEL< |
Parental | DCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGVSILA-VHSKDNYKRV |
D.LVKGLL.IDSVSF.G.AECYYFANASEPERCQK.PFNL.DP.PLLVVNIGSGV.ILA.VHSKD.YKR. | |
Retrocopy | DPLVKGLLCIDSVSFSGPAECYYFANASEPERCQKTPFNLGDPSPLLVVNIGSGVRILA>VHSKDSYKRA |
Parental | TGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGGDYERFGLPGWAVASSFGNMIYK |
.GTSLGGGTFLGLCSL.TGCESFEEALEMASKGDSTQADKL.RDI.GGD.ERFGLPG.AVASSFGNMIYK | |
Retrocopy | PGTSLGGGTFLGLCSLSTGCESFEEALEMASKGDSTQADKLIRDIDGGDHERFGLPG*AVASSFGNMIYK |
Parental | EKRESVSKEDLARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKA |
EK.ESVSKEDLA.ATLVTIT.NIGSVARMCAVNEKINRVVFVG.FL.VNTLSMKLLAYALDYWSKGQLKA | |
Retrocopy | EKQESVSKEDLAGATLVTITSNIGSVARMCAVNEKINRVVFVGSFLHVNTLSMKLLAYALDYWSKGQLKA |
Parental | LFLEHEGYFGAVGALLGLPNFS |
LFLEHEGYFGAVGALLGLPN.S | |
Retrocopy | LFLEHEGYFGAVGALLGLPNVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011633 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015550 | 1 retrocopy | |
Homo sapiens | ENSG00000120137 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004947 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004896 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000016024 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017509 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016157 | 3 retrocopies |