RetrogeneDB ID: | retro_nleu_3058 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397660.1:244072..245181(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PANK3 | ||
Ensembl ID: | ENSNLEG00000004896 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MKIKDAKKPSFPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLEL |
MKIKDAKKPS.PWFGMDIGGTLVKLSYFEPI.ITAEEEQEEVESL.SI.KYL.SNVAYGSTGIRDVHLEL | |
Retrocopy | MKIKDAKKPSLPWFGMDIGGTLVKLSYFEPIAITAEEEQEEVESL*SIQKYLISNVAYGSTGIRDVHLEL |
Parental | KDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHLHKLDELD |
KDLTLFGRR.NLHFIRFPTQ.LPTFIQMGRDKNFSTLQTVLCA.GGGAYKFEKDFR.IGNLHLHKLDELD | |
Retrocopy | KDLTLFGRRENLHFIRFPTQELPTFIQMGRDKNFSTLQTVLCAAGGGAYKFEKDFRAIGNLHLHKLDELD |
Parental | CLV-KGLLY-IDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGVSILAVHSKDNYKRV |
CLV.KGL...I..V.FNG.AECY..ANA.EP..CQKMPFNLDDPYPLLVVNIGSGVSILAVHSKD.YKR. | |
Retrocopy | CLV<KGLAV<I*TVGFNGHAECYCLANAAEPQQCQKMPFNLDDPYPLLVVNIGSGVSILAVHSKDIYKRK |
Parental | TGTSLGGGTFLGLCSLLTGCESFEEALEMA-SKGDSTQADKLVRDIYGGDYERFGLPGWAVASSFGNMIY |
T.TSLG.GTFLGLCSLLTGCESFEEALEMA.SKGDSTQADKL..DI.GGD.ERFGLPGWAVASSF.NMIY | |
Retrocopy | TETSLGEGTFLGLCSLLTGCESFEEALEMA>SKGDSTQADKLAHDISGGDHERFGLPGWAVASSFRNMIY |
Parental | KEKRESVSKEDLARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLK |
KEKRESVSKEDLARATLVTITNN.GSVARMCAVNE.INRVVFVGN.L.VNTLSMKLLAYA.D.WSKGQLK | |
Retrocopy | KEKRESVSKEDLARATLVTITNNFGSVARMCAVNEIINRVVFVGNVLCVNTLSMKLLAYAPDFWSKGQLK |
Parental | ALFLEHEGYFGAVGALLGLPNFS |
ALFLE.EGYFGAV.ALLGLPNFS | |
Retrocopy | ALFLEQEGYFGAVSALLGLPNFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011633 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015550 | 1 retrocopy | |
Homo sapiens | ENSG00000120137 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004947 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004896 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000016024 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017509 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016157 | 3 retrocopies |