RetrogeneDB ID: | retro_nleu_144 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | ADFV01138067.1:11027..11764(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PANK3 | ||
Ensembl ID: | ENSNLEG00000004896 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.16 % |
Parental protein coverage: | 66.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MKIKDAKKPSFPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLEL |
MKI.D.KKPS.PWFGMDIGGTLVKLSYFEPI.ITAEEEQEEVESLKSIRKYL.SNVAYGSTGIRDVHLEL | |
Retrocopy | MKIEDVKKPSLPWFGMDIGGTLVKLSYFEPIAITAEEEQEEVESLKSIRKYLISNVAYGSTGIRDVHLEL |
Parental | KDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHLHKLDELD |
KDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCA.GGGAYKFEKDFR.IGNLHLHKLDELD | |
Retrocopy | KDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCAAGGGAYKFEKDFRAIGNLHLHKLDELD |
Parental | CLV-KGLLY-IDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGVSILAVHSKDNYKRV |
CLV.KGL...I..V.FNG.AECY..ANA.EP..CQK.PFNLDDPYPLLVVN.GSGVSILAVHSKD.YKR. | |
Retrocopy | CLV<KGLAV<I*TVGFNGHAECYCLANATEPQQCQKIPFNLDDPYPLLVVNTGSGVSILAVHSKDIYKRM |
Parental | TGTSLGGGTFLGLCSLLTGCESFEEALEMA-SKGDSTQA |
TGTSLG.GTFLGLCSLLTGC.SFEEALEMA.SKGDSTQA | |
Retrocopy | TGTSLGEGTFLGLCSLLTGCKSFEEALEMA>SKGDSTQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011633 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015550 | 1 retrocopy | |
Homo sapiens | ENSG00000120137 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004947 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004896 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000016024 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017509 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016157 | 3 retrocopies |