RetrogeneDB ID: | retro_cjac_3198 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 9:21365123..21366008(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT19 | ||
Ensembl ID: | ENSCJAG00000029756 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.46 % |
Parental protein coverage: | 75.69 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 9 |
Parental | MTSYSYRQSSTS-SFG-GLGGASVRFGPGVAFRAPSIHGGSGG-RGVSVSSTRFVSSSSSG-GYGGGYGG |
..S.S.RQS..S.SFG.GLG..SV.FG.G..F.APSIH.GSG...G.SVSS..F..SSSS..G.G..... | |
Retrocopy | LASCSFRQSLVS*SFG<GLGSGSVHFGVGGNFLAPSIHWGSGS<HGLSVSSDGFAPSSSSR<GCGSSDAS |
Parental | ILATSDGLLAGNEKLTMQNLNDR-LASYLDKVRALEAANGELEVKIRDWYQKQGPGPSR-DYSHYYKTIQ |
.L..SD..L.G..K.T..N..D..L.SYLDKV.AL..A.GEL.VKI.DW.QKQGP.P....YSHY.KTI. | |
Retrocopy | VLGGSDSRLEGT-KITT*NIHDH<LCSYLDKVQALDEASGELKVKICDWDQKQGPDPLA<NYSHYFKTIE |
Parental | DLRDQILGATIENSRIVLQIDNARLAADDFRTKFETEQALRMSVEADI-NGLRRVLDELTLARTDLEMQI |
DL.D.ILG.TIENSRIVLQIDN.RLAADDFRTK.E.EQAL..SVEADI..GL.R.LDELT.AR.DLEM.I | |
Retrocopy | DLWDKILGVTIENSRIVLQIDNGRLAADDFRTKSEMEQAL*RSVEADI<QGLCRALDELTPARADLEMHI |
Parental | EGLKEELAYLKKNHEEELSVLRGQVGGQVSVEVDSAPGTDLAKILSDMRSQYEVMAEQNRK-DAEAW-FT |
.GL.EELAYL.KNH.EE.S.....VGGQV..EV.SAPG...A.IL.D..SQYEVMAEQ.RK.DAEAW..T | |
Retrocopy | RGLQEELAYLEKNHNEEISA----VGGQVNGEVGSAPGRGFAMILGDT*SQYEVMAEQTRK<DAEAW<VT |
Parental | SRSEELNREVAVHREQLQMSNTE-VSDLRRTL |
S..EEL.R.VA.HREQ.Q.S..E.V.D..RTL | |
Retrocopy | SQTEELSRKVAGHREQIQRSKFE<VTDRQRTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 290 .23 RPM |
SRP051959_heart | 0 .05 RPM | 4 .95 RPM |
SRP051959_kidney | 0 .00 RPM | 2 .37 RPM |
SRP051959_liver | 0 .04 RPM | 1 .75 RPM |
SRP051959_lung | 0 .15 RPM | 44 .90 RPM |
SRP051959_lymph_node | 0 .00 RPM | 0 .32 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 0 .09 RPM |
SRP051959_spleen | 0 .02 RPM | 1 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000029756 | 9 retrocopies |
retro_cjac_1151, retro_cjac_1812, retro_cjac_2347, retro_cjac_2646, retro_cjac_3108, retro_cjac_3198 , retro_cjac_3237, retro_cjac_3358, retro_cjac_633,
|
Equus caballus | ENSECAG00000014086 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007881 | 6 retrocopies | |
Homo sapiens | ENSG00000171345 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016901 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000016158 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018653 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010787 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016132 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024306 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007908 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008416 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009168 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014403 | 2 retrocopies |