RetrogeneDB ID: | retro_etel_1319 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_246335:10824..11685(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000007881 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.78 % |
Parental protein coverage: | 72. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAVYNYHQSSSASSFGGMGGGSMLFGVGGHFRAPSIHGGSGGRGVSVSSARFVSSSSSGGYGSGYGGVLS |
MA.YNYHQSSSASSFGGMGGGSMLFGVGGHFR.PSIHGGSGG.GV..SSARFVSSSSSGGYGSGY.GVLS | |
Retrocopy | MASYNYHQSSSASSFGGMGGGSMLFGVGGHFRVPSIHGGSGGCGVFLSSARFVSSSSSGGYGSGYVGVLS |
Parental | TSDGLLSGNEKITMQNLNDRLASYLDKVRALETANTDLEVKI-RDWYQKQ-GPGPARDYSHYYKTIEDLR |
TSDGLLSGNEKITMQNLNDRLASYLDKVRALE.ANTDLEVKI.RD.YQKQ.GPGPARDYSHYY.TIEDLR | |
Retrocopy | TSDGLLSGNEKITMQNLNDRLASYLDKVRALEEANTDLEVKI<RD*YQKQ<GPGPARDYSHYYETIEDLR |
Parental | DQILGATIQNSKVVLQIDNARLAADDFRTKFETEQALR-VSVEADINGLRRVLDELTLARADLEMQIEGL |
.QILGATIQNSKVVLQIDNARLAADDFR.KFETEQAL..VSVEADINGLRRVLDELTLA.ADLEMQ.EGL | |
Retrocopy | HQILGATIQNSKVVLQIDNARLAADDFRIKFETEQALA<VSVEADINGLRRVLDELTLACADLEMQSEGL |
Parental | KEELAFLKKNHEEEISVLKAQVGGQVSVEVDSTPGIDLAKILNDMRSQYELMAEKNRKDAEAWFIKQTEE |
KEELAFLKKNHEEEISVLKAQVGGQVSVEVDSTPGIDLAKI.NDMRSQ.ELMAEKNRKDAEAWFI..TEE | |
Retrocopy | KEELAFLKKNHEEEISVLKAQVGGQVSVEVDSTPGIDLAKIQNDMRSQDELMAEKNRKDAEAWFIRRTEE |
Parental | LKLEVDVHTEK |
LKLEVDVHTEK | |
Retrocopy | LKLEVDVHTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000029756 | 9 retrocopies | |
Equus caballus | ENSECAG00000014086 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007881 | 6 retrocopies | |
Homo sapiens | ENSG00000171345 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016901 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000016158 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018653 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010787 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016132 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024306 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007908 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008416 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009168 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014403 | 2 retrocopies |