Parental gene:

eca-mir-492-1, ENSECAG00000014086

Aliases:None
Description:eca-mir-492-1 [Source:miRBase;Acc:MI0012676]
Organism:Horse (Equus caballus)
Coordinates:11:21248752..21252838(+)


>ENSECAG00000014086
ATGACTTCCTACAGCTATCGCCAGTCCTCGGCCACCTCGTCCTTCGGGGGCCTGGGCAGTGGCTCCCTGCGCTTCGGGGC
CGGAGGCAACTTCCGCGCGCCCAGCATCCACGGGGGCTCGGGCGGCCGCGGCGTGTCGGTGTCCTCTGCCCGCTTCGTGA
CCTCGTCCTCCTCCGGGAGCTACGGCGGTGGCTATGCGGGCACCCTGGCCGGGTCCGACGGGCTGCCGGCGGGCAACGAG
AAGGAGACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGCAGGCCAACGGCGA
CCTGGAGGTGAAGATCCGCGACTGGTACCTGAAGCAGGGGCCCGGGCCCGCCCGCGACTACAGCCACTACTTCAAGACCA
TCGAGGAGCTGCGGGACAAGATTCTTGGGGCCACCATTGAGAACTCCAAGATTGTTCTGCAGATCGACAATGCCCGTCTG
GCTGCAGACGATTTCCGAACCAAGTTCGAGACTGAGCAGGCTCTGCGCTTGAGTGTGGAGGCCGACATCAATGGCCTGCG
CAGGGTGCTAGACGAGCTGACCCTGGCCAGGACTGATCTGGAGATGCAGATCGAAGGCCTGAAGGAGGAGCTGGCCTACC
TGAAGAAGAACCACGAGGAGGAAATCAGTGTCTTGAGGGGCCAGGTGGGTGGCCAGGTCACTGTGGAGGTGGATTCCGCT
CCAGGCATTGACCTAGCCAAGATCCTGAGCGACATGAGAAGCCAATATGAGGTCATGGCTGAGAAGAACAGGAAGGATGC
TGAAGCCTGGTTCACCACCAAGACTGAGGAGCTGAACCGGGAGGTCGCTGGCCACACGGAGCAGCTGCAGATTAACAAGA
CGGAGATCACTGACCTGCGGCGCACCCTCCAGGGCCTGGAGATCGAGCTGCAGTCTCAGCTCAGCATGAAAGCCGCCCTG
GAAGGCACGCTGGCGGAAACGGAGGCTCGCTTCGGAGCTCAGCTGGCACAGATCCAGGCGCTGATCAGTAGCATCGAAGC
CCAGCTGAGTGACGTGCGTGCTGACACCGAGCGGCAGAACCAGGAGTACCAGCTGCTCCTGGACGTCAAGACTCGGCTGG
AGCAGGAGATCGCCACCTACCGAAGCCTGCTGGAGGCCCAGGACGTCACCCATCAAATCGTG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 0 .08 RPM
SRP021940_embryo 3 .99 RPM
SRP021940_cerebellum 0 .00 RPM
SRP021940_testis 0 .51 RPM
SRP021940_placental_villous 15 .06 RPM
SRP021940_articular_cartilage 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000029756 ortholog_one2many 9 retrogenes
retro_cjac_1151, retro_cjac_1812, retro_cjac_2347, retro_cjac_2646, retro_cjac_3108, retro_cjac_3198, retro_cjac_3237, retro_cjac_3358, retro_cjac_633,
Echinops telfairi ENSETEG00000007881 ortholog_many2many 6 retrogenes
retro_etel_1217, retro_etel_1319, retro_etel_191, retro_etel_480, retro_etel_685, retro_etel_95,
Homo sapiens ENSG00000171345 ortholog_one2many 3 retrogenes
retro_hsap_3486, retro_hsap_585, retro_hsap_959,
Gorilla gorilla ENSGGOG00000016901 ortholog_one2many 3 retrogenes
retro_ggor_2352, retro_ggor_518, retro_ggor_773,
Macropus eugenii ENSMEUG00000016158 ortholog_one2many 3 retrogenes
retro_meug_1860, retro_meug_403, retro_meug_826,
Macaca mulatta ENSMMUG00000018653 ortholog_many2many 4 retrogenes
retro_mmul_1770, retro_mmul_717, retro_mmul_774, retro_mmul_790,
Nomascus leucogenys ENSNLEG00000010787 ortholog_one2many 3 retrogenes
retro_nleu_1609, retro_nleu_2204, retro_nleu_800,
Oryctolagus cuniculus ENSOCUG00000016132 ortholog_one2many 1 retrogene
retro_ocun_1884,
Otolemur garnettii ENSOGAG00000024306 ortholog_one2many 1 retrogene
retro_ogar_1301,
Ochotona princeps ENSOPRG00000007908 ortholog_one2many 2 retrogenes
retro_opri_337, retro_opri_673,
Pongo abelii ENSPPYG00000008416 ortholog_many2many 3 retrogenes
retro_pabe_2880, retro_pabe_603, retro_pabe_820,
Pan troglodytes ENSPTRG00000009168 ortholog_one2many 3 retrogenes
retro_ptro_2074, retro_ptro_2359, retro_ptro_430,
Ictidomys tridecemlineatus ENSSTOG00000014403 ortholog_one2many 2 retrogenes
retro_itri_1514, retro_itri_697,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_76 97.16 98.48
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2. retro_ecab_931 99.75 100.00
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Download FASTA sequences of all ENSECAG00000014086 retrocopies