RetrogeneDB ID: | retro_etel_191 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_3276:439328..440000(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000007881 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.33 % |
Parental protein coverage: | 56. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAVYNYHQSSSASSFGGMGG-GSMLFGVGGHFRAPSIHGGSGGRGVSVSSARFVSSSSSGGYGS-GYGGV |
M..Y.Y.QSSS.SSFGGMGG.GSMLFGVGGHF.APSIHGGSGGRG.SV.S.RFVSSSSSGGYG..GY.GV | |
Retrocopy | MTSYSYRQSSSTSSFGGMGG>GSMLFGVGGHFHAPSIHGGSGGRGMSVLSTRFVSSSSSGGYGG>GYAGV |
Parental | LSTSDGLLSGNEKITMQNLNDRLASYLDKVRALETANTDLEVKIRDWYQKQ-GPGPARDYSHYYKTIEDL |
LSTSDGLLSGNEKITMQNLNDRLASYL.KVRALETANT.LEVKI.DWYQKQ.GPGPARDYSHYY.TIEDL | |
Retrocopy | LSTSDGLLSGNEKITMQNLNDRLASYLGKVRALETANTELEVKIHDWYQKQ<GPGPARDYSHYYETIEDL |
Parental | RDQILGATIQNSKVVLQIDNARLAADDFRTKFETEQALR-VSVEADINGLRRVLDELTLARADLEMQIEG |
R.QILGATIQNSKVVLQIDNARLAADDF..KFE.EQAL..VSVE.D.NGL..VLDEL.LA.A.LEMQIEG | |
Retrocopy | RHQILGATIQNSKVVLQIDNARLAADDFCIKFEAEQALA<VSVEVDVNGLCQVLDELMLAHANLEMQIEG |
Parental | LKEELAFLKKNHEEEISV |
LKE.LAFLK...E...SV | |
Retrocopy | LKEGLAFLKAQMEGQVSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000029756 | 9 retrocopies | |
Equus caballus | ENSECAG00000014086 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007881 | 6 retrocopies | |
Homo sapiens | ENSG00000171345 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016901 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000016158 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018653 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010787 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016132 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024306 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007908 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008416 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009168 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014403 | 2 retrocopies |