Parental gene:

KRT19, ENSOCUG00000016132

Aliases:None
Description:keratin 19 [Source:HGNC Symbol;Acc:6436]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:19:42519116..42523024(-)


>ENSOCUG00000016132
ATGACTTCCTACAGCTATCGCCAGTCGTCCGCTGCCTCCTCCTTCGGAGGCCTGGGCGGCGGCTCCGTGCGCTTTGGGGC
CGGGGGCAGCTTCCGCGCGCCCAGCATCCACGGGGGCTCGGGTGGCCGCGGCGTGTCTGTGTCCTCTGCCCGCTTCGTGT
CCTCGTCCTCCTCTGGGGGCTACGGCGGCGGCTATGGGGTCGCCTTGGCTGGGTCCGACGGGCTCCTGGCTGGCAATGAG
AAGATCACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGCAAGCCAACGGCGA
GCTGGAGGTGAAGATCCGTGACTGGTACCAGAAGCAGGGGCCCGGGCCCTCTCGCGACTACAGCCACTACTTCAAGACCA
TCGAGGACCTGCGGGACAAGATTCTTGGTGCCACCATTGAGAACTCCAAGATTGTGCTGCAGATCGACAACGCCCGTCTG
GCTGCCGATGACTTCCGAACCAAGTTTGAGACGGAGCAGGCCCTGCGCCTGAGCGTGGAGGCCGACATCAACGGGCTGCG
CAGGGTGCTGGATGAGCTGACCCTGGCCAGAACCGACCTGGAGTTGCAGATCGAGGGCCTGAAGGAGGAGCTGGCCTACC
TGAAGAAGAACCACGAGGAGGAAATCAGTGCCCTGAGGGGCCAGGTGGGTGGCCAGGTCAGCGTGGAGGTGGATTCTGCT
CCAGGCATTGACCTAGGCAAGATCCTGAGTGAAATGAGAAGCCAGTATGAAGTCATGGCTGAGAAGAACCGGAAGGATGC
CGAGGCCTGGTTCAACAGCCGGACGGAGGAGCTGAGCCGCGAGGTGGCAGTCAACACGGAGCAGCTCAAGAGCAGCAGGT
CCGAGGTCACCGACCTGCGCCGGACCATGCAAGGCCTGGAGATCGAGCTGCAGTCACAGCTCAGTATGAAAGCGGCCCTG
GAAGGCACGCTGGCAGAGACGGAGGCCCGCTACGGGGCGCAGCTGGCGCAGATCCAGGCGGTGATCAGCAGCATCGAGGC
CCAGCTGAGTGATGTGCGTGCCGACACCGAGCGCCAGAACCAGGAGTACCAGCAGCTCATGGACATCAAGTCGCGGCTCG
AGCAGGAGATCGCCACCTACCGCAGCCTGCTCGAGGGCCAGGACGCCCACTACAACAACCTGCCCACCTCCAAGGTCATC
TGA

Library Parental gene expression (RPM)
SRP017611_liver 4 .08 RPM
SRP017611_kidney 52 .10 RPM
SRP017611_brain 0 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000029756 ortholog_one2one 9 retrogenes
retro_cjac_1151, retro_cjac_1812, retro_cjac_2347, retro_cjac_2646, retro_cjac_3108, retro_cjac_3198, retro_cjac_3237, retro_cjac_3358, retro_cjac_633,
Equus caballus ENSECAG00000014086 ortholog_one2many 2 retrogenes
retro_ecab_76, retro_ecab_931,
Echinops telfairi ENSETEG00000007881 ortholog_one2many 6 retrogenes
retro_etel_1217, retro_etel_1319, retro_etel_191, retro_etel_480, retro_etel_685, retro_etel_95,
Homo sapiens ENSG00000171345 ortholog_one2one 3 retrogenes
retro_hsap_3486, retro_hsap_585, retro_hsap_959,
Gorilla gorilla ENSGGOG00000016901 ortholog_one2one 3 retrogenes
retro_ggor_2352, retro_ggor_518, retro_ggor_773,
Macropus eugenii ENSMEUG00000016158 ortholog_one2one 3 retrogenes
retro_meug_1860, retro_meug_403, retro_meug_826,
Macaca mulatta ENSMMUG00000018653 ortholog_one2many 4 retrogenes
retro_mmul_1770, retro_mmul_717, retro_mmul_774, retro_mmul_790,
Nomascus leucogenys ENSNLEG00000010787 ortholog_one2one 3 retrogenes
retro_nleu_1609, retro_nleu_2204, retro_nleu_800,
Otolemur garnettii ENSOGAG00000024306 ortholog_one2one 1 retrogene
retro_ogar_1301,
Ochotona princeps ENSOPRG00000007908 ortholog_one2one 2 retrogenes
retro_opri_337, retro_opri_673,
Pongo abelii ENSPPYG00000008416 ortholog_one2many 3 retrogenes
retro_pabe_2880, retro_pabe_603, retro_pabe_820,
Pan troglodytes ENSPTRG00000009168 ortholog_one2one 3 retrogenes
retro_ptro_2074, retro_ptro_2359, retro_ptro_430,
Ictidomys tridecemlineatus ENSSTOG00000014403 ortholog_one2one 2 retrogenes
retro_itri_1514, retro_itri_697,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1884 60.54 55.25
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Download FASTA sequences of all ENSOCUG00000016132 retrocopies