RetrogeneDB ID: | retro_etel_95 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_1722:105759..106808(+) | ||
Located in intron of: | ENSETEG00000000893 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000007881 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.54 % |
Parental protein coverage: | 87.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | APSIHG-GSGGRGVSVSSARFVSSSSSGGYGSGYGGVLSTSDGLLSGNEKITMQNLNDRLASYLDKVRAL |
APSIHG.GSGGRGVSVSSARFVSSSSSG.YG.GY.GVLSTSDGLLSGN.KI.MQNLND.LASY.DK.R.L | |
Retrocopy | APSIHG<GSGGRGVSVSSARFVSSSSSGDYGGGYAGVLSTSDGLLSGNKKIAMQNLNDHLASYPDKMRTL |
Parental | ETANTDLEVKIRDWYQKQGPGPARDYSHYYKTIEDLRDQILGATIQNSKVVLQIDNARLAADDFRTKFET |
ETANT.LEVKIR.WYQKQGPGPARDYSHYY.TIEDLRDQIL.ATIQNSKVVLQI.NA..AADDFRTKFE. | |
Retrocopy | ETANTELEVKIRNWYQKQGPGPARDYSHYYETIEDLRDQILSATIQNSKVVLQINNACPAADDFRTKFEM |
Parental | EQALRVSVEADINGLRRVLDELTLARADLEMQIEGLKEELAFLKKNHEEEISVLKAQVGGQVSVEVDSTP |
E..L.VSVEADINGLR.VL..LTLARA.LEMQIEGLKEELAFLKKNHE.EIS.LKAQV.GQVSVE.DS.P | |
Retrocopy | ELNLHVSVEADINGLRLVLNQLTLARANLEMQIEGLKEELAFLKKNHEAEISSLKAQVQGQVSVEGDSAP |
Parental | GIDLAKILNDMRSQYELMAEKNRKDAEAWFIKQTEELKLEVDVHTEKLQVSKTEVTDLRRTLQSHEIELQ |
GIDLAKILN.MRSQYE.MAEKN.KDA.AWFI..TE.LKLEV..HTEKLQVSKT.VTDLR.TLQS.EIELQ | |
Retrocopy | GIDLAKILNGMRSQYEIMAEKNWKDA*AWFISRTENLKLEVAGHTEKLQVSKTDVTDLRWTLQSLEIELQ |
Parental | SQLSMKAALEGTLAETEARFGAHLAQIQAMV-SSMEAQLSEVRSDME-RQNQEYQLLLGIKSRLEQE-IA |
SQLSMKAALEGTLAET.A.FG.HL.QIQ.MV..SMEAQL.E..SD.E...NQEYQ.L.GIKSRLEQ.... | |
Retrocopy | SQLSMKAALEGTLAETVAHFGVHLVQIQVMV<NSMEAQLREAHSDVE<GRNQEYQKLWGIKSRLEQR<LT |
Parental | TYRSL |
TYRSL | |
Retrocopy | TYRSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000029756 | 9 retrocopies | |
Equus caballus | ENSECAG00000014086 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007881 | 6 retrocopies | |
Homo sapiens | ENSG00000171345 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016901 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000016158 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018653 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010787 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016132 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024306 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007908 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008416 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009168 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014403 | 2 retrocopies |