RetrogeneDB ID: | retro_cpor_1220 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_59:4359444..4360002(+) | ||
Located in intron of: | ENSCPOG00000006171 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YY1 | ||
Ensembl ID: | ENSCPOG00000020809 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ADEKKDIDHETVVEEQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRT |
..E....D.E...E.....ENSPPDYSEYMTGKK.PP.GIPGIDLSDPKQLAEF.R.K.RK...DD.PRT | |
Retrocopy | SSEERALDAELLAENA--NENSPPDYSEYMTGKKIPPEGIPGIDLSDPKQLAEFTRVK-RKRGKDDVPRT |
Parental | IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS |
.AC...GC.KMF.DN.AMRKHLHTHGPRVH.C.ECGKAF.E.SKLKRHQLVHTGE.PFQC.FEGCGK.FS | |
Retrocopy | VACRQEGCKKMFKDNCAMRKHLHTHGPRVHICSECGKAFLENSKLKRHQLVHTGERPFQCKFEGCGKSFS |
Parental | LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ |
L.FNLRTH.RIHTGDRP.VCPF.GCN..FAQSTNLKSHIL.HAK.KN.Q | |
Retrocopy | LGFNLRTHMRIHTGDRPFVCPFTGCNRRFAQSTNLKSHILAHAKNKNSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .21 RPM |
SRP017611_liver | 0 .04 RPM | 20 .76 RPM |
SRP040447_lung | 0 .08 RPM | 29 .74 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 15 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011146 | 1 retrocopy | |
Bos taurus | ENSBTAG00000020819 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016853 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020809 | 2 retrocopies |
retro_cpor_1220 , retro_cpor_1522,
|
Equus caballus | ENSECAG00000005805 | 1 retrocopy | |
Homo sapiens | ENSG00000100811 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000026332 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000002931 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021264 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026938 | 1 retrocopy |