RetrogeneDB ID: retro_mputfur_867

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896962.1:9976337..9976862(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: YY2
• Ensembl ID: ENSMPUG00000002931
• Aliases: None
• Description: YY2 transcription factor [Source:HGNC Symbol;Acc:31684]

Sequence

>retro_mputfur_867
CAACAGACTGTCAGAGAGAATTCACAGTTTAAGTATTCTGAGTATGCAATGGGCAAGAAGCTTCCTCCTGGAGGAGCACC
CAGCATTGACCTACCAAATCCTAAACAGTCTGCAGAATTTGCTAGAAAGAAGCCAGCAAGAAATAAGGAATATGAGGCTC
CAGAAAGAATTGCTTGTCCTTACAGTGGATGCCCAAAAAAGGTAAAGAATAGAGCTTCCCTGAGAAAGCATCTCCTTGTC
CATGGTCCTCGTGATCACGTATGTGCAGAATGTGGGAAAGCATTCAATGAGAGTTCGAAACTAAAAAGACATTTTCTTGT
TCATACTGGAGAGAAGCCATTTCAGTGCACTTTTGAGGGGTGTGGAAAACGCTTTTCCCTAGACTACAATTTGCGTACGC
ATGTCCGCATCCACACTGGGGAGAAACGTTTTGTGTGTCCCTTTGAAAGTTGTCACAAGAGGTTTACTCAGTCAAATAAT
ATGAAAATTCACGTCTTAACTCATGGAAAGACCAACACAAATCAG

Alignment

ORF - retro_mputfur_867 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.0 %
• Parental protein coverage: 72.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPHKGCTKMFRD
          .Q...ENS...YSEY..GKKLPPGG.P.IDL..PKQ.AEFAR.KP...KE..AP..IACP..GC.K....
Retrocopy QQTVRENSQFKYSEYAMGKKLPPGGAPSIDLPNPKQSAEFARKKPARNKEYEAPERIACPYSGCPKKVKN

Parental  NSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG
          ....RKHL..HGPR.HVCAECGKAF.ESSKLKRH.LVHTGEKPFQCTFEGCGKRFSLD.NLRTHVRIHTG
Retrocopy RASLRKHLLVHGPRDHVCAECGKAFNESSKLKRHFLVHTGEKPFQCTFEGCGKRFSLDYNLRTHVRIHTG

Parental  DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
          ....VCPF..C.K.F.QS.N.K.H.LTH.K...NQ
Retrocopy EKRFVCPFESCHKRFTQSNNMKIHVLTHGKTNTNQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_867 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_867 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011146	1 retrocopy	retro_amel_2,
Bos taurus	ENSBTAG00000020819	1 retrocopy	retro_btau_91,
Callithrix jacchus	ENSCJAG00000016853	2 retrocopies	retro_cjac_1931, retro_cjac_4045,
Cavia porcellus	ENSCPOG00000020809	2 retrocopies	retro_cpor_1220, retro_cpor_1522,
Equus caballus	ENSECAG00000005805	1 retrocopy	retro_ecab_97,
Homo sapiens	ENSG00000100811	2 retrocopies	retro_hsap_106, retro_hsap_97,
Gorilla gorilla	ENSGGOG00000026332	2 retrocopies	retro_ggor_190, retro_ggor_2,
Mustela putorius furo	ENSMPUG00000002931	1 retrocopy	retro_mputfur_867 ,
Mus musculus	ENSMUSG00000021264	1 retrocopy	retro_mmus_190,
Oryctolagus cuniculus	ENSOCUG00000026938	1 retrocopy	retro_ocun_1871,